miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29037 5' -58 NC_006146.1 + 154388 0.66 0.862352
Target:  5'- cGGGGUCccUCcggcuGGCCUGggaCCCGGGGAG-GCa -3'
miRNA:   3'- -UCUCAG--AG-----UCGGGC---GGGUUCCUCuCG- -5'
29037 5' -58 NC_006146.1 + 151310 0.66 0.862352
Target:  5'- cGGGGUCccUCcggcuGGCCUGggaCCCGGGGAG-GCa -3'
miRNA:   3'- -UCUCAG--AG-----UCGGGC---GGGUUCCUCuCG- -5'
29037 5' -58 NC_006146.1 + 148232 0.66 0.862352
Target:  5'- cGGGGUCccUCcggcuGGCCUGggaCCCGGGGAG-GCa -3'
miRNA:   3'- -UCUCAG--AG-----UCGGGC---GGGUUCCUCuCG- -5'
29037 5' -58 NC_006146.1 + 145154 0.66 0.862352
Target:  5'- cGGGGUCccUCcggcuGGCCUGggaCCCGGGGAG-GCa -3'
miRNA:   3'- -UCUCAG--AG-----UCGGGC---GGGUUCCUCuCG- -5'
29037 5' -58 NC_006146.1 + 142076 0.66 0.862352
Target:  5'- cGGGGUCccUCcggcuGGCCUGggaCCCGGGGAG-GCa -3'
miRNA:   3'- -UCUCAG--AG-----UCGGGC---GGGUUCCUCuCG- -5'
29037 5' -58 NC_006146.1 + 102731 0.66 0.862352
Target:  5'- --cGUCcugacgCugcGCCUGCCCGGGGAGgaGGCa -3'
miRNA:   3'- ucuCAGa-----Gu--CGGGCGGGUUCCUC--UCG- -5'
29037 5' -58 NC_006146.1 + 157466 0.66 0.862352
Target:  5'- cGGGGUCccUCcggcuGGCCUGggaCCCGGGGAG-GCa -3'
miRNA:   3'- -UCUCAG--AG-----UCGGGC---GGGUUCCUCuCG- -5'
29037 5' -58 NC_006146.1 + 51735 0.66 0.862352
Target:  5'- gGGAGg--CGGCgC-CCCGAGGuGGGCu -3'
miRNA:   3'- -UCUCagaGUCGgGcGGGUUCCuCUCG- -5'
29037 5' -58 NC_006146.1 + 115958 0.66 0.862352
Target:  5'- aAGAcaUUCAGCCgCGUauuuugCCAuGGGAGAGCg -3'
miRNA:   3'- -UCUcaGAGUCGG-GCG------GGU-UCCUCUCG- -5'
29037 5' -58 NC_006146.1 + 100160 0.66 0.862352
Target:  5'- ---uUCUCGGCggCGUCCGcgAGGGGGGCa -3'
miRNA:   3'- ucucAGAGUCGg-GCGGGU--UCCUCUCG- -5'
29037 5' -58 NC_006146.1 + 46698 0.66 0.862352
Target:  5'- aGGAGUCccaguaagagUCGGCCgCGgcggcUCCGAGGcGGGCg -3'
miRNA:   3'- -UCUCAG----------AGUCGG-GC-----GGGUUCCuCUCG- -5'
29037 5' -58 NC_006146.1 + 14836 0.66 0.861604
Target:  5'- -cGGUCUCgGGCCCggggccgcgggagGCCgAGGGGGcAGCc -3'
miRNA:   3'- ucUCAGAG-UCGGG-------------CGGgUUCCUC-UCG- -5'
29037 5' -58 NC_006146.1 + 51843 0.66 0.861604
Target:  5'- gAGGGgggCUCggggccuGGCCCgaGCCCGGGGAuGGGg -3'
miRNA:   3'- -UCUCa--GAG-------UCGGG--CGGGUUCCU-CUCg -5'
29037 5' -58 NC_006146.1 + 47142 0.66 0.84701
Target:  5'- cGAGgcguagCgcacgAGCCUGUCCcuGAGGAGGGCa -3'
miRNA:   3'- uCUCa-----Gag---UCGGGCGGG--UUCCUCUCG- -5'
29037 5' -58 NC_006146.1 + 64223 0.66 0.84701
Target:  5'- ------aCAGCCCcagggaucccguGCCCGGGGAGAGg -3'
miRNA:   3'- ucucagaGUCGGG------------CGGGUUCCUCUCg -5'
29037 5' -58 NC_006146.1 + 59142 0.66 0.84701
Target:  5'- cGGuuUCUCgcuGGCCCGCCuCAGGGAc-GCc -3'
miRNA:   3'- -UCucAGAG---UCGGGCGG-GUUCCUcuCG- -5'
29037 5' -58 NC_006146.1 + 32783 0.66 0.84701
Target:  5'- cGGGGUCgcCAGCgucguccagaCGCUCGGGGGGuGCa -3'
miRNA:   3'- -UCUCAGa-GUCGg---------GCGGGUUCCUCuCG- -5'
29037 5' -58 NC_006146.1 + 136613 0.66 0.84701
Target:  5'- cGGGGUCgcCAGCgucguccagaCGCUCGGGGGGuGCa -3'
miRNA:   3'- -UCUCAGa-GUCGg---------GCGGGUUCCUCuCG- -5'
29037 5' -58 NC_006146.1 + 114733 0.66 0.846223
Target:  5'- cGAGUaUCGGCgcauccucaaggaCgGCCgCGGGGAGGGCu -3'
miRNA:   3'- uCUCAgAGUCG-------------GgCGG-GUUCCUCUCG- -5'
29037 5' -58 NC_006146.1 + 15008 0.66 0.839053
Target:  5'- --cGUCUCucuGCCCuGUuugCCAGGGAGGGg -3'
miRNA:   3'- ucuCAGAGu--CGGG-CG---GGUUCCUCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.