miRNA display CGI


Results 1 - 20 of 252 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29038 3' -53.4 NC_006146.1 + 156896 0.66 0.981825
Target:  5'- uGG-ACUCGGGGCg-AGUGGaCGGGCCu -3'
miRNA:   3'- -CCaUGGGCUCUGgaUUACUcGUCCGG- -5'
29038 3' -53.4 NC_006146.1 + 131495 0.66 0.981825
Target:  5'- gGGUGCCaGGGAUCgaccGGGaaaGGGCCc -3'
miRNA:   3'- -CCAUGGgCUCUGGauuaCUCg--UCCGG- -5'
29038 3' -53.4 NC_006146.1 + 60127 0.66 0.981825
Target:  5'- aGGgGCCgggggaGGGACCUGGUGGGgGGuguguGCCa -3'
miRNA:   3'- -CCaUGGg-----CUCUGGAUUACUCgUC-----CGG- -5'
29038 3' -53.4 NC_006146.1 + 54287 0.66 0.981825
Target:  5'- gGGUcucGCCUGAGACCag--GAaGCGacguguGGCCa -3'
miRNA:   3'- -CCA---UGGGCUCUGGauuaCU-CGU------CCGG- -5'
29038 3' -53.4 NC_006146.1 + 42686 0.66 0.981825
Target:  5'- gGGcUGCCUGAGGCU-----GGCAGaGCCc -3'
miRNA:   3'- -CC-AUGGGCUCUGGauuacUCGUC-CGG- -5'
29038 3' -53.4 NC_006146.1 + 77936 0.66 0.981825
Target:  5'- aGGUGCCgGGGGucgcuguuuggUCUGGgccgGAGCcgguGGCCu -3'
miRNA:   3'- -CCAUGGgCUCU-----------GGAUUa---CUCGu---CCGG- -5'
29038 3' -53.4 NC_006146.1 + 22716 0.66 0.981825
Target:  5'- uGUGCuCCGucuGGACgCacGUGGGCAuGGCCg -3'
miRNA:   3'- cCAUG-GGC---UCUG-GauUACUCGU-CCGG- -5'
29038 3' -53.4 NC_006146.1 + 141507 0.66 0.981825
Target:  5'- uGG-ACUCGGGGCg-AGUGGaCGGGCCu -3'
miRNA:   3'- -CCaUGGGCUCUGgaUUACUcGUCCGG- -5'
29038 3' -53.4 NC_006146.1 + 153818 0.66 0.981825
Target:  5'- uGG-ACUCGGGGCg-AGUGGaCGGGCCu -3'
miRNA:   3'- -CCaUGGGCUCUGgaUUACUcGUCCGG- -5'
29038 3' -53.4 NC_006146.1 + 144585 0.66 0.981825
Target:  5'- uGG-ACUCGGGGCg-AGUGGaCGGGCCu -3'
miRNA:   3'- -CCaUGGGCUCUGgaUUACUcGUCCGG- -5'
29038 3' -53.4 NC_006146.1 + 147663 0.66 0.981825
Target:  5'- uGG-ACUCGGGGCg-AGUGGaCGGGCCu -3'
miRNA:   3'- -CCaUGGGCUCUGgaUUACUcGUCCGG- -5'
29038 3' -53.4 NC_006146.1 + 150740 0.66 0.981825
Target:  5'- uGG-ACUCGGGGCg-AGUGGaCGGGCCu -3'
miRNA:   3'- -CCaUGGGCUCUGgaUUACUcGUCCGG- -5'
29038 3' -53.4 NC_006146.1 + 33497 0.66 0.981621
Target:  5'- uGGUcCCCGGGACCcc---AGCAcccucccGGCCu -3'
miRNA:   3'- -CCAuGGGCUCUGGauuacUCGU-------CCGG- -5'
29038 3' -53.4 NC_006146.1 + 23448 0.66 0.979704
Target:  5'- cGGcUGCCCGucucGGCCUAcgaGGCccuGGCCg -3'
miRNA:   3'- -CC-AUGGGCu---CUGGAUuacUCGu--CCGG- -5'
29038 3' -53.4 NC_006146.1 + 14014 0.66 0.979704
Target:  5'- uGGUGCUgGaAGGCggAGggcaggGAGCAGGCg -3'
miRNA:   3'- -CCAUGGgC-UCUGgaUUa-----CUCGUCCGg -5'
29038 3' -53.4 NC_006146.1 + 167567 0.66 0.979704
Target:  5'- uGGagGCCCgcggaGAGGCCguGUGuGgAGGCCg -3'
miRNA:   3'- -CCa-UGGG-----CUCUGGauUACuCgUCCGG- -5'
29038 3' -53.4 NC_006146.1 + 36758 0.66 0.979704
Target:  5'- gGGU-UCCGcAGGCCgcguaagGGGguGGCCc -3'
miRNA:   3'- -CCAuGGGC-UCUGGauua---CUCguCCGG- -5'
29038 3' -53.4 NC_006146.1 + 138336 0.66 0.979704
Target:  5'- aGGU-CCgCGAGAUUUGggGuAGCGGaGCCu -3'
miRNA:   3'- -CCAuGG-GCUCUGGAUuaC-UCGUC-CGG- -5'
29038 3' -53.4 NC_006146.1 + 129785 0.66 0.979704
Target:  5'- ---cCCCGGGAcCCUAAaGuGgAGGCCc -3'
miRNA:   3'- ccauGGGCUCU-GGAUUaCuCgUCCGG- -5'
29038 3' -53.4 NC_006146.1 + 139492 0.66 0.979704
Target:  5'- cGGcACCCGGGgggguGCCUGGUguuuaguagGAGgAGGUCu -3'
miRNA:   3'- -CCaUGGGCUC-----UGGAUUA---------CUCgUCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.