miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29038 5' -49.9 NC_006146.1 + 40233 0.66 0.998295
Target:  5'- aGGGGCCcgGGAUgUAGucCGAcCUCGGGu -3'
miRNA:   3'- -CCCCGGa-CUUAaGUCu-GCUaGAGUUC- -5'
29038 5' -49.9 NC_006146.1 + 39435 0.66 0.998295
Target:  5'- cGGGGCCUGGcccgugaGGAUGGaUUUAAGg -3'
miRNA:   3'- -CCCCGGACUuaag---UCUGCUaGAGUUC- -5'
29038 5' -49.9 NC_006146.1 + 71251 0.66 0.997957
Target:  5'- uGGGGCCUGGcgggGGGCGGcCUCu-- -3'
miRNA:   3'- -CCCCGGACUuaagUCUGCUaGAGuuc -5'
29038 5' -49.9 NC_006146.1 + 75787 0.66 0.997566
Target:  5'- gGGGGCUcuac-UCGGGCG-UCUCGGGc -3'
miRNA:   3'- -CCCCGGacuuaAGUCUGCuAGAGUUC- -5'
29038 5' -49.9 NC_006146.1 + 15941 0.67 0.996594
Target:  5'- uGGGCgaggCUGggUggcugggCAGGcCGGUCUCGGGu -3'
miRNA:   3'- cCCCG----GACuuAa------GUCU-GCUAGAGUUC- -5'
29038 5' -49.9 NC_006146.1 + 57070 0.67 0.996594
Target:  5'- gGGGGCCUGAcg-CGGAUGG-C-CAAc -3'
miRNA:   3'- -CCCCGGACUuaaGUCUGCUaGaGUUc -5'
29038 5' -49.9 NC_006146.1 + 167439 0.67 0.996594
Target:  5'- cGGGGCggGGggUCGGGCGGgcaugCUCcGGg -3'
miRNA:   3'- -CCCCGgaCUuaAGUCUGCUa----GAGuUC- -5'
29038 5' -49.9 NC_006146.1 + 170234 0.67 0.996594
Target:  5'- cGGGGCggGGggUCGGGCGGgcaugCUCcGGg -3'
miRNA:   3'- -CCCCGgaCUuaAGUCUGCUa----GAGuUC- -5'
29038 5' -49.9 NC_006146.1 + 168371 0.67 0.996594
Target:  5'- cGGGGCggGGggUCGGGCGGgcaugCUCcGGg -3'
miRNA:   3'- -CCCCGgaCUuaAGUCUGCUa----GAGuUC- -5'
29038 5' -49.9 NC_006146.1 + 169303 0.67 0.996594
Target:  5'- cGGGGCggGGggUCGGGCGGgcaugCUCcGGg -3'
miRNA:   3'- -CCCCGgaCUuaAGUCUGCUa----GAGuUC- -5'
29038 5' -49.9 NC_006146.1 + 123338 0.67 0.996594
Target:  5'- cGGGGCCg----UCAGG-GGUCUCGc- -3'
miRNA:   3'- -CCCCGGacuuaAGUCUgCUAGAGUuc -5'
29038 5' -49.9 NC_006146.1 + 56734 0.67 0.996
Target:  5'- gGGGGCC-GAAUUCgcgcgGGACG-UC-CGGGg -3'
miRNA:   3'- -CCCCGGaCUUAAG-----UCUGCuAGaGUUC- -5'
29038 5' -49.9 NC_006146.1 + 167010 0.67 0.996
Target:  5'- gGGGGCCUcg--UCGGugGGcCUCGc- -3'
miRNA:   3'- -CCCCGGAcuuaAGUCugCUaGAGUuc -5'
29038 5' -49.9 NC_006146.1 + 52980 0.67 0.995323
Target:  5'- cGGGGCg-GGg--CGGGCG-UCUCGAGg -3'
miRNA:   3'- -CCCCGgaCUuaaGUCUGCuAGAGUUC- -5'
29038 5' -49.9 NC_006146.1 + 88686 0.67 0.994557
Target:  5'- cGGGUaUGGAgcCAGugGGUCUUggGa -3'
miRNA:   3'- cCCCGgACUUaaGUCugCUAGAGuuC- -5'
29038 5' -49.9 NC_006146.1 + 15539 0.67 0.993691
Target:  5'- cGGGGCCU---UUCAGGCc--CUCGGGc -3'
miRNA:   3'- -CCCCGGAcuuAAGUCUGcuaGAGUUC- -5'
29038 5' -49.9 NC_006146.1 + 27851 0.67 0.993691
Target:  5'- cGGGGCCU---UUCAGGCc--CUCGGGc -3'
miRNA:   3'- -CCCCGGAcuuAAGUCUGcuaGAGUUC- -5'
29038 5' -49.9 NC_006146.1 + 24773 0.67 0.993691
Target:  5'- cGGGGCCU---UUCAGGCc--CUCGGGc -3'
miRNA:   3'- -CCCCGGAcuuAAGUCUGcuaGAGUUC- -5'
29038 5' -49.9 NC_006146.1 + 21695 0.67 0.993691
Target:  5'- cGGGGCCU---UUCAGGCc--CUCGGGc -3'
miRNA:   3'- -CCCCGGAcuuAAGUCUGcuaGAGUUC- -5'
29038 5' -49.9 NC_006146.1 + 18617 0.67 0.993691
Target:  5'- cGGGGCCU---UUCAGGCc--CUCGGGc -3'
miRNA:   3'- -CCCCGGAcuuAAGUCUGcuaGAGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.