miRNA display CGI


Results 1 - 20 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29039 3' -58 NC_006146.1 + 87256 0.66 0.871149
Target:  5'- gGUGGAGGUcugGCCCgCAGAGc---CCCCg -3'
miRNA:   3'- gUACCUCUA---UGGG-GUCUCcuccGGGG- -5'
29039 3' -58 NC_006146.1 + 50013 0.66 0.871149
Target:  5'- --gGGGGGcACCaccgaagCAGAaGGGGCCCCg -3'
miRNA:   3'- guaCCUCUaUGGg------GUCUcCUCCGGGG- -5'
29039 3' -58 NC_006146.1 + 133133 0.66 0.871149
Target:  5'- aAUGGAGAUGCUuuaaCCuuGGGGGGaCCUa -3'
miRNA:   3'- gUACCUCUAUGG----GGucUCCUCCgGGG- -5'
29039 3' -58 NC_006146.1 + 146282 0.66 0.871149
Target:  5'- aCGUGGcg--GCCCCAGuGGAGcuCUCCg -3'
miRNA:   3'- -GUACCucuaUGGGGUCuCCUCc-GGGG- -5'
29039 3' -58 NC_006146.1 + 112115 0.66 0.871149
Target:  5'- gGUGGAGGUGgUgCUGGuGGuGGCCUCg -3'
miRNA:   3'- gUACCUCUAUgG-GGUCuCCuCCGGGG- -5'
29039 3' -58 NC_006146.1 + 14647 0.66 0.866796
Target:  5'- uCAUGGugcugcccaaccacGGcACCCCGuccacggccGAGGGGGCCCg -3'
miRNA:   3'- -GUACCu-------------CUaUGGGGU---------CUCCUCCGGGg -5'
29039 3' -58 NC_006146.1 + 34777 0.66 0.863853
Target:  5'- --cGGGGcagcggaCCCAGGGGcacccGGCCCCc -3'
miRNA:   3'- guaCCUCuaug---GGGUCUCCu----CCGGGG- -5'
29039 3' -58 NC_006146.1 + 34591 0.66 0.863853
Target:  5'- --cGGGGcagcggaCCCAGGGGcacccGGCCCCc -3'
miRNA:   3'- guaCCUCuaug---GGGUCUCCu----CCGGGG- -5'
29039 3' -58 NC_006146.1 + 34498 0.66 0.863853
Target:  5'- --cGGGGcagcggaCCCAGGGGcacccGGCCCCc -3'
miRNA:   3'- guaCCUCuaug---GGGUCUCCu----CCGGGG- -5'
29039 3' -58 NC_006146.1 + 34405 0.66 0.863853
Target:  5'- --cGGGGcagcggaCCCAGGGGcacccGGCCCCc -3'
miRNA:   3'- guaCCUCuaug---GGGUCUCCu----CCGGGG- -5'
29039 3' -58 NC_006146.1 + 34312 0.66 0.863853
Target:  5'- --cGGGGcagcggaCCCAGGGGcacccGGCCCCc -3'
miRNA:   3'- guaCCUCuaug---GGGUCUCCu----CCGGGG- -5'
29039 3' -58 NC_006146.1 + 34870 0.66 0.863853
Target:  5'- --cGGGGcagcggaCCCAGGGGcacccGGCCCCc -3'
miRNA:   3'- guaCCUCuaug---GGGUCUCCu----CCGGGG- -5'
29039 3' -58 NC_006146.1 + 34962 0.66 0.863853
Target:  5'- --cGGGGcagcggaCCCAGGGGcacccGGCCCCc -3'
miRNA:   3'- guaCCUCuaug---GGGUCUCCu----CCGGGG- -5'
29039 3' -58 NC_006146.1 + 35055 0.66 0.863853
Target:  5'- --cGGGGcagcggaCCCAGGGGcacccGGCCCCc -3'
miRNA:   3'- guaCCUCuaug---GGGUCUCCu----CCGGGG- -5'
29039 3' -58 NC_006146.1 + 35148 0.66 0.863853
Target:  5'- --cGGGGcagcggaCCCAGGGGcacccGGCCCCc -3'
miRNA:   3'- guaCCUCuaug---GGGUCUCCu----CCGGGG- -5'
29039 3' -58 NC_006146.1 + 35241 0.66 0.863853
Target:  5'- --cGGGGcagcggaCCCAGGGGcacccGGCCCCc -3'
miRNA:   3'- guaCCUCuaug---GGGUCUCCu----CCGGGG- -5'
29039 3' -58 NC_006146.1 + 35334 0.66 0.863853
Target:  5'- --cGGGGcagcggaCCCAGGGGcacccGGCCCCc -3'
miRNA:   3'- guaCCUCuaug---GGGUCUCCu----CCGGGG- -5'
29039 3' -58 NC_006146.1 + 35520 0.66 0.863853
Target:  5'- --cGGGGcagcggaCCCAGGGGcacccGGCCCCc -3'
miRNA:   3'- guaCCUCuaug---GGGUCUCCu----CCGGGG- -5'
29039 3' -58 NC_006146.1 + 35613 0.66 0.863853
Target:  5'- --cGGGGcagcggaCCCAGGGGcacccGGCCCCc -3'
miRNA:   3'- guaCCUCuaug---GGGUCUCCu----CCGGGG- -5'
29039 3' -58 NC_006146.1 + 35706 0.66 0.863853
Target:  5'- --cGGGGcagcggaCCCAGGGGcacccGGCCCCc -3'
miRNA:   3'- guaCCUCuaug---GGGUCUCCu----CCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.