miRNA display CGI


Results 1 - 20 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29039 3' -58 NC_006146.1 + 279 0.67 0.812681
Target:  5'- --gGGGGAgcccgggaagaCCCGGGGGcGGGCCCg -3'
miRNA:   3'- guaCCUCUaug--------GGGUCUCC-UCCGGGg -5'
29039 3' -58 NC_006146.1 + 512 0.76 0.308028
Target:  5'- ---cGAGGc-CCCCAGGGGAGGCCCg -3'
miRNA:   3'- guacCUCUauGGGGUCUCCUCCGGGg -5'
29039 3' -58 NC_006146.1 + 1443 0.76 0.308028
Target:  5'- ---cGAGGc-CCCCAGGGGAGGCCCg -3'
miRNA:   3'- guacCUCUauGGGGUCUCCUCCGGGg -5'
29039 3' -58 NC_006146.1 + 2375 0.76 0.308028
Target:  5'- ---cGAGGc-CCCCAGGGGAGGCCCg -3'
miRNA:   3'- guacCUCUauGGGGUCUCCUCCGGGg -5'
29039 3' -58 NC_006146.1 + 3307 0.76 0.308028
Target:  5'- ---cGAGGc-CCCCAGGGGAGGCCCg -3'
miRNA:   3'- guacCUCUauGGGGUCUCCUCCGGGg -5'
29039 3' -58 NC_006146.1 + 6411 0.68 0.753224
Target:  5'- cCAUGGGGucccuuUGgCCCAGGGccauguGGGCCCUg -3'
miRNA:   3'- -GUACCUCu-----AUgGGGUCUCc-----UCCGGGG- -5'
29039 3' -58 NC_006146.1 + 6653 0.68 0.771824
Target:  5'- --gGGAGGUGgCCCAcc--AGGCCCCa -3'
miRNA:   3'- guaCCUCUAUgGGGUcuccUCCGGGG- -5'
29039 3' -58 NC_006146.1 + 9057 0.66 0.863853
Target:  5'- cCGUGGAGccggucuCCCaCGGGGcGuGGCCCa -3'
miRNA:   3'- -GUACCUCuau----GGG-GUCUC-CuCCGGGg -5'
29039 3' -58 NC_006146.1 + 12039 0.7 0.652461
Target:  5'- aCGUGGcGGGUgcggccaccaGCCCCAugugcucgcuuugcGAGGgccGGGCCCCg -3'
miRNA:   3'- -GUACC-UCUA----------UGGGGU--------------CUCC---UCCGGGG- -5'
29039 3' -58 NC_006146.1 + 12161 0.72 0.545979
Target:  5'- --cGGAGAgACCCCuacguGAucucGGGGGCCUCg -3'
miRNA:   3'- guaCCUCUaUGGGGu----CU----CCUCCGGGG- -5'
29039 3' -58 NC_006146.1 + 12356 0.68 0.771824
Target:  5'- -cUGGAGAaggaGCCCCAG-GGA--CCCCg -3'
miRNA:   3'- guACCUCUa---UGGGGUCuCCUccGGGG- -5'
29039 3' -58 NC_006146.1 + 12914 0.73 0.488561
Target:  5'- gGUGGugagccuGGUGCCuCUGGAGGcccuGGCCCCg -3'
miRNA:   3'- gUACCu------CUAUGG-GGUCUCCu---CCGGGG- -5'
29039 3' -58 NC_006146.1 + 13332 0.68 0.743766
Target:  5'- gGUGGAGucgGCCgCGGccuacgcGGAGGCCaCCu -3'
miRNA:   3'- gUACCUCua-UGGgGUCu------CCUCCGG-GG- -5'
29039 3' -58 NC_006146.1 + 13365 0.72 0.53624
Target:  5'- --aGGGGAgccGCCCUcGGGGcccaGGGCCCCu -3'
miRNA:   3'- guaCCUCUa--UGGGGuCUCC----UCCGGGG- -5'
29039 3' -58 NC_006146.1 + 13449 0.79 0.227702
Target:  5'- --cGGAGggACCCCGGcagcccGGGuGGCCCCa -3'
miRNA:   3'- guaCCUCuaUGGGGUC------UCCuCCGGGG- -5'
29039 3' -58 NC_006146.1 + 13737 0.71 0.565619
Target:  5'- --cGGAGggACCCCGGcagcccGGGAGaGCCgCCu -3'
miRNA:   3'- guaCCUCuaUGGGGUC------UCCUC-CGG-GG- -5'
29039 3' -58 NC_006146.1 + 14647 0.66 0.866796
Target:  5'- uCAUGGugcugcccaaccacGGcACCCCGuccacggccGAGGGGGCCCg -3'
miRNA:   3'- -GUACCu-------------CUaUGGGGU---------CUCCUCCGGGg -5'
29039 3' -58 NC_006146.1 + 14806 0.67 0.806659
Target:  5'- --aGGAGAggccgGCCgggCCGGAGGAgggcacggucucgGGCCCg -3'
miRNA:   3'- guaCCUCUa----UGG---GGUCUCCU-------------CCGGGg -5'
29039 3' -58 NC_006146.1 + 15315 0.66 0.863853
Target:  5'- --cGGAGGccaGCCCCGGugugccccuGGcGGGcGCCCCg -3'
miRNA:   3'- guaCCUCUa--UGGGGUC---------UC-CUC-CGGGG- -5'
29039 3' -58 NC_006146.1 + 15414 0.66 0.863853
Target:  5'- --aGGug--GCCUCAGAGGGgcuGGCCCg -3'
miRNA:   3'- guaCCucuaUGGGGUCUCCU---CCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.