miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29039 5' -55.6 NC_006146.1 + 125792 0.66 0.930149
Target:  5'- -gGCGGUCaccgGCCgagccGGAGAAUggcCGGCa -3'
miRNA:   3'- aaUGCCGGa---CGGaa---CCUCUUGu--GCCG- -5'
29039 5' -55.6 NC_006146.1 + 86494 0.66 0.930149
Target:  5'- -gGCaGCUggGCCUUGaGGGGcaGCugGGCu -3'
miRNA:   3'- aaUGcCGGa-CGGAAC-CUCU--UGugCCG- -5'
29039 5' -55.6 NC_006146.1 + 77962 0.66 0.930149
Target:  5'- ---gGGCCggagccggugGCCUUGGAGGuGC-CGGUc -3'
miRNA:   3'- aaugCCGGa---------CGGAACCUCU-UGuGCCG- -5'
29039 5' -55.6 NC_006146.1 + 26174 0.66 0.930149
Target:  5'- -aGCGGCCUggaggggauuagGUC--GGAGGGgGCGGCc -3'
miRNA:   3'- aaUGCCGGA------------CGGaaCCUCUUgUGCCG- -5'
29039 5' -55.6 NC_006146.1 + 18968 0.66 0.930149
Target:  5'- -aGCGGCC--CCUa-GAGAGgGCGGCa -3'
miRNA:   3'- aaUGCCGGacGGAacCUCUUgUGCCG- -5'
29039 5' -55.6 NC_006146.1 + 52446 0.66 0.924821
Target:  5'- uUUGgGGUCgacGCCcUGGAGAggggccucaucaACACGGUc -3'
miRNA:   3'- -AAUgCCGGa--CGGaACCUCU------------UGUGCCG- -5'
29039 5' -55.6 NC_006146.1 + 41055 0.66 0.924821
Target:  5'- -gGCGGCCcuggggGCCUcggggUGGAGGGa--GGCc -3'
miRNA:   3'- aaUGCCGGa-----CGGA-----ACCUCUUgugCCG- -5'
29039 5' -55.6 NC_006146.1 + 45821 0.66 0.924821
Target:  5'- -cACGGCC-GCCUcgaagacGGAGAcggGgAUGGCg -3'
miRNA:   3'- aaUGCCGGaCGGAa------CCUCU---UgUGCCG- -5'
29039 5' -55.6 NC_006146.1 + 54911 0.66 0.924821
Target:  5'- --cUGGCCgGCCUUcaGGGAC-CGGCa -3'
miRNA:   3'- aauGCCGGaCGGAAccUCUUGuGCCG- -5'
29039 5' -55.6 NC_006146.1 + 54417 0.66 0.91925
Target:  5'- gUGCGGCCUGggggUGGAcuuucaGAACGUGGCc -3'
miRNA:   3'- aAUGCCGGACgga-ACCU------CUUGUGCCG- -5'
29039 5' -55.6 NC_006146.1 + 72199 0.66 0.91925
Target:  5'- -gGCGGCCggauggGCg--GGAGAccaGCGGCc -3'
miRNA:   3'- aaUGCCGGa-----CGgaaCCUCUug-UGCCG- -5'
29039 5' -55.6 NC_006146.1 + 115150 0.66 0.91925
Target:  5'- --cUGGCCcGCCgccgggcggUGGAGAucUugGGCg -3'
miRNA:   3'- aauGCCGGaCGGa--------ACCUCUu-GugCCG- -5'
29039 5' -55.6 NC_006146.1 + 141314 0.66 0.913438
Target:  5'- -gGCuGGCCUGCCagGGGGcaAAgGgGGCu -3'
miRNA:   3'- aaUG-CCGGACGGaaCCUC--UUgUgCCG- -5'
29039 5' -55.6 NC_006146.1 + 144392 0.66 0.913438
Target:  5'- -gGCuGGCCUGCCagGGGGcaAAgGgGGCu -3'
miRNA:   3'- aaUG-CCGGACGGaaCCUC--UUgUgCCG- -5'
29039 5' -55.6 NC_006146.1 + 147470 0.66 0.913438
Target:  5'- -gGCuGGCCUGCCagGGGGcaAAgGgGGCu -3'
miRNA:   3'- aaUG-CCGGACGGaaCCUC--UUgUgCCG- -5'
29039 5' -55.6 NC_006146.1 + 150548 0.66 0.913438
Target:  5'- -gGCuGGCCUGCCagGGGGcaAAgGgGGCu -3'
miRNA:   3'- aaUG-CCGGACGGaaCCUC--UUgUgCCG- -5'
29039 5' -55.6 NC_006146.1 + 153626 0.66 0.913438
Target:  5'- -gGCuGGCCUGCCagGGGGcaAAgGgGGCu -3'
miRNA:   3'- aaUG-CCGGACGGaaCCUC--UUgUgCCG- -5'
29039 5' -55.6 NC_006146.1 + 156703 0.66 0.913438
Target:  5'- -gGCuGGCCUGCCagGGGGcaAAgGgGGCu -3'
miRNA:   3'- aaUG-CCGGACGGaaCCUC--UUgUgCCG- -5'
29039 5' -55.6 NC_006146.1 + 119940 0.66 0.913438
Target:  5'- -aGCGGCgCUGCUgccGGAGGucuCGGUg -3'
miRNA:   3'- aaUGCCG-GACGGaa-CCUCUuguGCCG- -5'
29039 5' -55.6 NC_006146.1 + 53450 0.66 0.907385
Target:  5'- -gGCGGUgguguCUGCCcgGGAG-GCGCGGg -3'
miRNA:   3'- aaUGCCG-----GACGGaaCCUCuUGUGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.