Results 1 - 12 of 12 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2904 | 3' | -56.3 | NC_001493.1 | + | 3028 | 0.68 | 0.766558 |
Target: 5'- uGGGACgGCCGcgggGAUGGcAUC-CUCGAc -3' miRNA: 3'- -CCCUGgUGGCa---CUACC-UGGaGAGCUu -5' |
|||||||
2904 | 3' | -56.3 | NC_001493.1 | + | 8020 | 0.67 | 0.849195 |
Target: 5'- cGGGGCCACCGggcggGAggGGAUcgaucacggguugaaCUUUCGGGa -3' miRNA: 3'- -CCCUGGUGGCa----CUa-CCUG---------------GAGAGCUU- -5' |
|||||||
2904 | 3' | -56.3 | NC_001493.1 | + | 19548 | 0.68 | 0.75701 |
Target: 5'- aGGcGGCCGCCGUGAagacgagagagcUGGccagcacgcucuACCUCUUGGc -3' miRNA: 3'- -CC-CUGGUGGCACU------------ACC------------UGGAGAGCUu -5' |
|||||||
2904 | 3' | -56.3 | NC_001493.1 | + | 26313 | 0.66 | 0.867737 |
Target: 5'- gGGGuCCACCccccucucccAUGGACgCUCUCGGAc -3' miRNA: 3'- -CCCuGGUGGcac-------UACCUG-GAGAGCUU- -5' |
|||||||
2904 | 3' | -56.3 | NC_001493.1 | + | 29899 | 1.09 | 0.002558 |
Target: 5'- cGGGACCACCGUGAUGGACCUCUCGAAg -3' miRNA: 3'- -CCCUGGUGGCACUACCUGGAGAGCUU- -5' |
|||||||
2904 | 3' | -56.3 | NC_001493.1 | + | 53551 | 0.68 | 0.794439 |
Target: 5'- cGGGAUCGCCaccgcgGUGAUGGACUccguggaUUCGGAa -3' miRNA: 3'- -CCCUGGUGG------CACUACCUGGa------GAGCUU- -5' |
|||||||
2904 | 3' | -56.3 | NC_001493.1 | + | 62102 | 0.74 | 0.421417 |
Target: 5'- cGGGAuCCGCCG-GAUucGACCUCUCGGu -3' miRNA: 3'- -CCCU-GGUGGCaCUAc-CUGGAGAGCUu -5' |
|||||||
2904 | 3' | -56.3 | NC_001493.1 | + | 93226 | 0.67 | 0.812304 |
Target: 5'- uGGGAUgGCUGcGAUGaaGGCCUCUaCGAAg -3' miRNA: 3'- -CCCUGgUGGCaCUAC--CUGGAGA-GCUU- -5' |
|||||||
2904 | 3' | -56.3 | NC_001493.1 | + | 105602 | 0.68 | 0.756049 |
Target: 5'- --cGCCAUCGaaguucagcucggUGAUGGACCUCUUGGc -3' miRNA: 3'- cccUGGUGGC-------------ACUACCUGGAGAGCUu -5' |
|||||||
2904 | 3' | -56.3 | NC_001493.1 | + | 108863 | 0.68 | 0.775984 |
Target: 5'- -cGACCAUCGccugcGAUGGACCcgaggCUCGAGg -3' miRNA: 3'- ccCUGGUGGCa----CUACCUGGa----GAGCUU- -5' |
|||||||
2904 | 3' | -56.3 | NC_001493.1 | + | 118583 | 0.68 | 0.766558 |
Target: 5'- uGGGACgGCCGcgggGAUGGcAUC-CUCGAc -3' miRNA: 3'- -CCCUGgUGGCa---CUACC-UGGaGAGCUu -5' |
|||||||
2904 | 3' | -56.3 | NC_001493.1 | + | 123574 | 0.67 | 0.849195 |
Target: 5'- cGGGGCCACCGggcggGAggGGAUcgaucacggguugaaCUUUCGGGa -3' miRNA: 3'- -CCCUGGUGGCa----CUa-CCUG---------------GAGAGCUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home