Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 2904 | 5' | -57 | NC_001493.1 | + | 92986 | 0.66 | 0.814994 |
|
Target: 5'- gGGUUCGGGGacgccGUCGgGUgggGCG-AGCUCg -3' miRNA: 3'- -UCGAGCUCU-----CAGCgCAa--CGCcUCGAG- -5' |
|||||||
| 2904 | 5' | -57 | NC_001493.1 | + | 8877 | 0.67 | 0.806165 |
|
Target: 5'- aAGCUCugauGGAG-CGCGUgGCGGGGUcCg -3' miRNA: 3'- -UCGAGc---UCUCaGCGCAaCGCCUCGaG- -5' |
|||||||
| 2904 | 5' | -57 | NC_001493.1 | + | 124431 | 0.67 | 0.806165 |
|
Target: 5'- aAGCUCugauGGAG-CGCGUgGCGGGGUcCg -3' miRNA: 3'- -UCGAGc---UCUCaGCGCAaCGCCUCGaG- -5' |
|||||||
| 2904 | 5' | -57 | NC_001493.1 | + | 82129 | 0.71 | 0.547015 |
|
Target: 5'- aGGCUCGAG-GUCuuccagGUGGAGCUCa -3' miRNA: 3'- -UCGAGCUCuCAGcgcaa-CGCCUCGAG- -5' |
|||||||
| 2904 | 5' | -57 | NC_001493.1 | + | 15121 | 0.74 | 0.396975 |
|
Target: 5'- cGGUUCGGGAGUCuCGggGCgcucaaGGAGCUCc -3' miRNA: 3'- -UCGAGCUCUCAGcGCaaCG------CCUCGAG- -5' |
|||||||
| 2904 | 5' | -57 | NC_001493.1 | + | 130676 | 0.74 | 0.396975 |
|
Target: 5'- cGGUUCGGGAGUCuCGggGCgcucaaGGAGCUCc -3' miRNA: 3'- -UCGAGCUCUCAGcGCaaCG------CCUCGAG- -5' |
|||||||
| 2904 | 5' | -57 | NC_001493.1 | + | 29862 | 1.08 | 0.002082 |
|
Target: 5'- cAGCUCGAGAGUCGCGUUGCGGAGCUCc -3' miRNA: 3'- -UCGAGCUCUCAGCGCAACGCCUCGAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home