miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29040 3' -53.3 NC_006146.1 + 111165 0.66 0.980367
Target:  5'- uUCAGGcGCUCgGGGAgGCGAgaGAUGc -3'
miRNA:   3'- -GGUCCuCGGGgUCCUaUGUUgaCUAC- -5'
29040 3' -53.3 NC_006146.1 + 108973 0.66 0.980367
Target:  5'- aCCAGG-GCCCU-GGA-GCccCUGAUGg -3'
miRNA:   3'- -GGUCCuCGGGGuCCUaUGuuGACUAC- -5'
29040 3' -53.3 NC_006146.1 + 157648 0.66 0.980367
Target:  5'- -uGGGcaccAGCCCCuGGAccaGGCUGAUGu -3'
miRNA:   3'- ggUCC----UCGGGGuCCUaugUUGACUAC- -5'
29040 3' -53.3 NC_006146.1 + 55638 0.66 0.980367
Target:  5'- -aAGaGGGCCCCcgaGGGGUGCAGCa---- -3'
miRNA:   3'- ggUC-CUCGGGG---UCCUAUGUUGacuac -5'
29040 3' -53.3 NC_006146.1 + 142139 0.66 0.978104
Target:  5'- aCUAGGGGCCCUGGGccccgaggGCGGCUc--- -3'
miRNA:   3'- -GGUCCUCGGGGUCCua------UGUUGAcuac -5'
29040 3' -53.3 NC_006146.1 + 143007 0.66 0.978104
Target:  5'- -gAGGAGgCCgGGGA-GCGGCUGGg- -3'
miRNA:   3'- ggUCCUCgGGgUCCUaUGUUGACUac -5'
29040 3' -53.3 NC_006146.1 + 145217 0.66 0.978104
Target:  5'- aCUAGGGGCCCUGGGccccgaggGCGGCUc--- -3'
miRNA:   3'- -GGUCCUCGGGGUCCua------UGUUGAcuac -5'
29040 3' -53.3 NC_006146.1 + 146085 0.66 0.978104
Target:  5'- -gAGGAGgCCgGGGA-GCGGCUGGg- -3'
miRNA:   3'- ggUCCUCgGGgUCCUaUGUUGACUac -5'
29040 3' -53.3 NC_006146.1 + 148295 0.66 0.978104
Target:  5'- aCUAGGGGCCCUGGGccccgaggGCGGCUc--- -3'
miRNA:   3'- -GGUCCUCGGGGUCCua------UGUUGAcuac -5'
29040 3' -53.3 NC_006146.1 + 149163 0.66 0.978104
Target:  5'- -gAGGAGgCCgGGGA-GCGGCUGGg- -3'
miRNA:   3'- ggUCCUCgGGgUCCUaUGUUGACUac -5'
29040 3' -53.3 NC_006146.1 + 132896 0.66 0.978104
Target:  5'- cCCAGGuucacguGCCUCAGGAguuCAGCUc--- -3'
miRNA:   3'- -GGUCCu------CGGGGUCCUau-GUUGAcuac -5'
29040 3' -53.3 NC_006146.1 + 158398 0.66 0.978104
Target:  5'- -gAGGAGgCCgGGGA-GCGGCUGGg- -3'
miRNA:   3'- ggUCCUCgGGgUCCUaUGUUGACUac -5'
29040 3' -53.3 NC_006146.1 + 157529 0.66 0.978104
Target:  5'- aCUAGGGGCCCUGGGccccgaggGCGGCUc--- -3'
miRNA:   3'- -GGUCCUCGGGGUCCua------UGUUGAcuac -5'
29040 3' -53.3 NC_006146.1 + 155319 0.66 0.978104
Target:  5'- -gAGGAGgCCgGGGA-GCGGCUGGg- -3'
miRNA:   3'- ggUCCUCgGGgUCCUaUGUUGACUac -5'
29040 3' -53.3 NC_006146.1 + 154451 0.66 0.978104
Target:  5'- aCUAGGGGCCCUGGGccccgaggGCGGCUc--- -3'
miRNA:   3'- -GGUCCUCGGGGUCCua------UGUUGAcuac -5'
29040 3' -53.3 NC_006146.1 + 152241 0.66 0.978104
Target:  5'- -gAGGAGgCCgGGGA-GCGGCUGGg- -3'
miRNA:   3'- ggUCCUCgGGgUCCUaUGUUGACUac -5'
29040 3' -53.3 NC_006146.1 + 151373 0.66 0.978104
Target:  5'- aCUAGGGGCCCUGGGccccgaggGCGGCUc--- -3'
miRNA:   3'- -GGUCCUCGGGGUCCua------UGUUGAcuac -5'
29040 3' -53.3 NC_006146.1 + 45048 0.66 0.978104
Target:  5'- gCCGGGGccggcuCCCUAGGG-GCGGCUGAg- -3'
miRNA:   3'- -GGUCCUc-----GGGGUCCUaUGUUGACUac -5'
29040 3' -53.3 NC_006146.1 + 126490 0.66 0.975653
Target:  5'- cCCGGGAGCCCCucgAGGAa--GGCgccGUGc -3'
miRNA:   3'- -GGUCCUCGGGG---UCCUaugUUGac-UAC- -5'
29040 3' -53.3 NC_006146.1 + 137915 0.66 0.975653
Target:  5'- gCCGGGGGUUCCGGGG-GCAGCc---- -3'
miRNA:   3'- -GGUCCUCGGGGUCCUaUGUUGacuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.