miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29040 3' -53.3 NC_006146.1 + 81713 1.1 0.004825
Target:  5'- cCCAGGAGCCCCAGGAUACAACUGAUGu -3'
miRNA:   3'- -GGUCCUCGGGGUCCUAUGUUGACUAC- -5'
29040 3' -53.3 NC_006146.1 + 77306 0.77 0.48584
Target:  5'- cCCAGGAGCCCgGcGGGUcgcGCAugcccagGCUGAUGg -3'
miRNA:   3'- -GGUCCUCGGGgU-CCUA---UGU-------UGACUAC- -5'
29040 3' -53.3 NC_006146.1 + 34083 0.75 0.586873
Target:  5'- gCCGGGGGUCCCGGGggGCAGCc---- -3'
miRNA:   3'- -GGUCCUCGGGGUCCuaUGUUGacuac -5'
29040 3' -53.3 NC_006146.1 + 137469 0.75 0.628189
Target:  5'- aCCcGGAGCCCCAGGAccgagcgGCGGCgcagcGGUGc -3'
miRNA:   3'- -GGuCCUCGGGGUCCUa------UGUUGa----CUAC- -5'
29040 3' -53.3 NC_006146.1 + 8637 0.74 0.648896
Target:  5'- cCCAGcGAGCCCCAGGAaaacaGGCuugUGAUGu -3'
miRNA:   3'- -GGUC-CUCGGGGUCCUaug--UUG---ACUAC- -5'
29040 3' -53.3 NC_006146.1 + 137591 0.74 0.648896
Target:  5'- cCCcGGAGCCCCAGGAccgagcgGCGGCgcagcGGUGc -3'
miRNA:   3'- -GGuCCUCGGGGUCCUa------UGUUGa----CUAC- -5'
29040 3' -53.3 NC_006146.1 + 141203 0.74 0.679833
Target:  5'- aCCAGGGGCUCCuGGggGgAACUGGg- -3'
miRNA:   3'- -GGUCCUCGGGGuCCuaUgUUGACUac -5'
29040 3' -53.3 NC_006146.1 + 33321 0.72 0.766597
Target:  5'- uCCuGGGGCUCCGGGGUccgggugcuccgggGCAGCcgGGUGg -3'
miRNA:   3'- -GGuCCUCGGGGUCCUA--------------UGUUGa-CUAC- -5'
29040 3' -53.3 NC_006146.1 + 123598 0.72 0.788243
Target:  5'- uCCAGGAGgCCCGGGAggaguccCGGCUGc-- -3'
miRNA:   3'- -GGUCCUCgGGGUCCUau-----GUUGACuac -5'
29040 3' -53.3 NC_006146.1 + 853 0.72 0.797424
Target:  5'- aUAGGGGCCCUAGGA-GCAGCg---- -3'
miRNA:   3'- gGUCCUCGGGGUCCUaUGUUGacuac -5'
29040 3' -53.3 NC_006146.1 + 137609 0.71 0.806452
Target:  5'- gCCGGGuGCCCCuGGGU-CcGCUGGUu -3'
miRNA:   3'- -GGUCCuCGGGGuCCUAuGuUGACUAc -5'
29040 3' -53.3 NC_006146.1 + 33443 0.71 0.806452
Target:  5'- uCCuGGGGCUCCGGG-UGCAcCUGAa- -3'
miRNA:   3'- -GGuCCUCGGGGUCCuAUGUuGACUac -5'
29040 3' -53.3 NC_006146.1 + 55405 0.71 0.815317
Target:  5'- uCCGGGA-CCCCAGGAcgUACcuGGCUGGc- -3'
miRNA:   3'- -GGUCCUcGGGGUCCU--AUG--UUGACUac -5'
29040 3' -53.3 NC_006146.1 + 65935 0.71 0.84086
Target:  5'- cUCGGGAGCCCCAGGccuuuuUGgGGaaGGUGa -3'
miRNA:   3'- -GGUCCUCGGGGUCCu-----AUgUUgaCUAC- -5'
29040 3' -53.3 NC_006146.1 + 45132 0.7 0.848996
Target:  5'- gCCGGGAGCCUUGGGcuuUGCgGGCUGGg- -3'
miRNA:   3'- -GGUCCUCGGGGUCCu--AUG-UUGACUac -5'
29040 3' -53.3 NC_006146.1 + 79649 0.7 0.856931
Target:  5'- gCCGGcGAGCCCCccaugGGGAcgacACAGCggGAUGa -3'
miRNA:   3'- -GGUC-CUCGGGG-----UCCUa---UGUUGa-CUAC- -5'
29040 3' -53.3 NC_006146.1 + 162384 0.7 0.872169
Target:  5'- gCAGGAcgggggcuuuGCCCUGGGAguaACAAgUGGUGg -3'
miRNA:   3'- gGUCCU----------CGGGGUCCUa--UGUUgACUAC- -5'
29040 3' -53.3 NC_006146.1 + 123378 0.7 0.879461
Target:  5'- gCCGGGGGCCCCGcaaccuGGcUGgAACUGGc- -3'
miRNA:   3'- -GGUCCUCGGGGU------CCuAUgUUGACUac -5'
29040 3' -53.3 NC_006146.1 + 9926 0.7 0.879461
Target:  5'- --cGGAGCCCgcgagCAGGA-GCAGCUGAg- -3'
miRNA:   3'- gguCCUCGGG-----GUCCUaUGUUGACUac -5'
29040 3' -53.3 NC_006146.1 + 65628 0.7 0.879461
Target:  5'- aCCucuucGAGUUCCAGGAUGCGGCucucUGGUGg -3'
miRNA:   3'- -GGuc---CUCGGGGUCCUAUGUUG----ACUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.