Results 21 - 40 of 153 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29040 | 3' | -53.3 | NC_006146.1 | + | 118047 | 0.66 | 0.975653 |
Target: 5'- aCCuGGAGCCCCcgggcGGGGgcgGCGGCg---- -3' miRNA: 3'- -GGuCCUCGGGG-----UCCUa--UGUUGacuac -5' |
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29040 | 3' | -53.3 | NC_006146.1 | + | 8440 | 0.66 | 0.975653 |
Target: 5'- aCCAGGAGagCUCGGGGgcgAGCUGAa- -3' miRNA: 3'- -GGUCCUCg-GGGUCCUaugUUGACUac -5' |
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29040 | 3' | -53.3 | NC_006146.1 | + | 140771 | 0.66 | 0.975653 |
Target: 5'- aCUAGGuuGCCCCuuGGUACAcauaagGCUGAUu -3' miRNA: 3'- -GGUCCu-CGGGGucCUAUGU------UGACUAc -5' |
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29040 | 3' | -53.3 | NC_006146.1 | + | 126490 | 0.66 | 0.975653 |
Target: 5'- cCCGGGAGCCCCucgAGGAa--GGCgccGUGc -3' miRNA: 3'- -GGUCCUCGGGG---UCCUaugUUGac-UAC- -5' |
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29040 | 3' | -53.3 | NC_006146.1 | + | 95518 | 0.66 | 0.973008 |
Target: 5'- uCCGGGAGCUgUcGGGUGCGGCg---- -3' miRNA: 3'- -GGUCCUCGGgGuCCUAUGUUGacuac -5' |
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29040 | 3' | -53.3 | NC_006146.1 | + | 136402 | 0.66 | 0.973008 |
Target: 5'- gCCGGGuGCCCCuGGGU-CcGCUGc-- -3' miRNA: 3'- -GGUCCuCGGGGuCCUAuGuUGACuac -5' |
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29040 | 3' | -53.3 | NC_006146.1 | + | 65207 | 0.66 | 0.973008 |
Target: 5'- uCUGGGGGCCCUGGGAgcccggGCGuccAgaGGUGa -3' miRNA: 3'- -GGUCCUCGGGGUCCUa-----UGU---UgaCUAC- -5' |
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29040 | 3' | -53.3 | NC_006146.1 | + | 135287 | 0.66 | 0.973008 |
Target: 5'- gCCGGGuGCCCCuGGGU-CcGCUGc-- -3' miRNA: 3'- -GGUCCuCGGGGuCCUAuGuUGACuac -5' |
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29040 | 3' | -53.3 | NC_006146.1 | + | 135751 | 0.66 | 0.973008 |
Target: 5'- gCCGGGuGCCCCuGGGU-CcGCUGc-- -3' miRNA: 3'- -GGUCCuCGGGGuCCUAuGuUGACuac -5' |
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29040 | 3' | -53.3 | NC_006146.1 | + | 135659 | 0.66 | 0.973008 |
Target: 5'- gCCGGGuGCCCCuGGGU-CcGCUGc-- -3' miRNA: 3'- -GGUCCuCGGGGuCCUAuGuUGACuac -5' |
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29040 | 3' | -53.3 | NC_006146.1 | + | 136495 | 0.66 | 0.973008 |
Target: 5'- gCCGGGuGCCCCuGGGU-CcGCUGc-- -3' miRNA: 3'- -GGUCCuCGGGGuCCUAuGuUGACuac -5' |
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29040 | 3' | -53.3 | NC_006146.1 | + | 136123 | 0.66 | 0.973008 |
Target: 5'- gCCGGGuGCCCCuGGGU-CcGCUGc-- -3' miRNA: 3'- -GGUCCuCGGGGuCCUAuGuUGACuac -5' |
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29040 | 3' | -53.3 | NC_006146.1 | + | 124533 | 0.66 | 0.973008 |
Target: 5'- aCGGGGGCCUgGGGGaGCuGCUGucgGa -3' miRNA: 3'- gGUCCUCGGGgUCCUaUGuUGACua-C- -5' |
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29040 | 3' | -53.3 | NC_006146.1 | + | 136588 | 0.66 | 0.973008 |
Target: 5'- gCCGGGuGCCCCuGGGU-CcGCUGc-- -3' miRNA: 3'- -GGUCCuCGGGGuCCUAuGuUGACuac -5' |
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29040 | 3' | -53.3 | NC_006146.1 | + | 33204 | 0.66 | 0.973008 |
Target: 5'- cCCGGGgggaGGCCggagggggagCCGGGAUGgGGCUGGg- -3' miRNA: 3'- -GGUCC----UCGG----------GGUCCUAUgUUGACUac -5' |
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29040 | 3' | -53.3 | NC_006146.1 | + | 116823 | 0.66 | 0.973008 |
Target: 5'- uCCAGGAcguGUgCCGGGAcGCGGCggccaGGUGg -3' miRNA: 3'- -GGUCCU---CGgGGUCCUaUGUUGa----CUAC- -5' |
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29040 | 3' | -53.3 | NC_006146.1 | + | 135380 | 0.66 | 0.973008 |
Target: 5'- gCCGGGuGCCCCuGGGU-CcGCUGc-- -3' miRNA: 3'- -GGUCCuCGGGGuCCUAuGuUGACuac -5' |
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29040 | 3' | -53.3 | NC_006146.1 | + | 135844 | 0.66 | 0.973008 |
Target: 5'- gCCGGGuGCCCCuGGGU-CcGCUGc-- -3' miRNA: 3'- -GGUCCuCGGGGuCCUAuGuUGACuac -5' |
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29040 | 3' | -53.3 | NC_006146.1 | + | 135937 | 0.66 | 0.973008 |
Target: 5'- gCCGGGuGCCCCuGGGU-CcGCUGc-- -3' miRNA: 3'- -GGUCCuCGGGGuCCUAuGuUGACuac -5' |
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29040 | 3' | -53.3 | NC_006146.1 | + | 136030 | 0.66 | 0.973008 |
Target: 5'- gCCGGGuGCCCCuGGGU-CcGCUGc-- -3' miRNA: 3'- -GGUCCuCGGGGuCCUAuGuUGACuac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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