miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29040 3' -53.3 NC_006146.1 + 853 0.72 0.797424
Target:  5'- aUAGGGGCCCUAGGA-GCAGCg---- -3'
miRNA:   3'- gGUCCUCGGGGUCCUaUGUUGacuac -5'
29040 3' -53.3 NC_006146.1 + 6497 0.67 0.960344
Target:  5'- aCCGGGuGGUCCUuGGAUGCucCUGAc- -3'
miRNA:   3'- -GGUCC-UCGGGGuCCUAUGuuGACUac -5'
29040 3' -53.3 NC_006146.1 + 8440 0.66 0.975653
Target:  5'- aCCAGGAGagCUCGGGGgcgAGCUGAa- -3'
miRNA:   3'- -GGUCCUCg-GGGUCCUaugUUGACUac -5'
29040 3' -53.3 NC_006146.1 + 8637 0.74 0.648896
Target:  5'- cCCAGcGAGCCCCAGGAaaacaGGCuugUGAUGu -3'
miRNA:   3'- -GGUC-CUCGGGGUCCUaug--UUG---ACUAC- -5'
29040 3' -53.3 NC_006146.1 + 9926 0.7 0.879461
Target:  5'- --cGGAGCCCgcgagCAGGA-GCAGCUGAg- -3'
miRNA:   3'- gguCCUCGGG-----GUCCUaUGUUGACUac -5'
29040 3' -53.3 NC_006146.1 + 12181 0.68 0.934512
Target:  5'- cUCGGGGGCCUCGGGcuccUACAAC-GAg- -3'
miRNA:   3'- -GGUCCUCGGGGUCCu---AUGUUGaCUac -5'
29040 3' -53.3 NC_006146.1 + 12362 0.67 0.948066
Target:  5'- -aAGGAGCCCCAGGGaccccGgGACUuuaucaaGAUGu -3'
miRNA:   3'- ggUCCUCGGGGUCCUa----UgUUGA-------CUAC- -5'
29040 3' -53.3 NC_006146.1 + 29590 0.66 0.970161
Target:  5'- aCAGGA-CCCCGGGGgcuCAgccagGCUGAa- -3'
miRNA:   3'- gGUCCUcGGGGUCCUau-GU-----UGACUac -5'
29040 3' -53.3 NC_006146.1 + 29709 0.68 0.939416
Target:  5'- cCCAGGAGCCCCuGG-UAUuuCUa--- -3'
miRNA:   3'- -GGUCCUCGGGGuCCuAUGuuGAcuac -5'
29040 3' -53.3 NC_006146.1 + 32021 0.66 0.967105
Target:  5'- -gAGGGGCCUCGGGAcgagGC-GCUGGc- -3'
miRNA:   3'- ggUCCUCGGGGUCCUa---UGuUGACUac -5'
29040 3' -53.3 NC_006146.1 + 32121 0.68 0.939416
Target:  5'- gCAGGGGugccacgucaCCCCGGGGUGCugg-GGUGg -3'
miRNA:   3'- gGUCCUC----------GGGGUCCUAUGuugaCUAC- -5'
29040 3' -53.3 NC_006146.1 + 33204 0.66 0.973008
Target:  5'- cCCGGGgggaGGCCggagggggagCCGGGAUGgGGCUGGg- -3'
miRNA:   3'- -GGUCC----UCGG----------GGUCCUAUgUUGACUac -5'
29040 3' -53.3 NC_006146.1 + 33215 0.66 0.975653
Target:  5'- uCCuGGuGCUCCGGG--GCAGCcgGGUGg -3'
miRNA:   3'- -GGuCCuCGGGGUCCuaUGUUGa-CUAC- -5'
29040 3' -53.3 NC_006146.1 + 33320 0.68 0.929365
Target:  5'- cCCGGcccGAGCUCCAGGAccggGCAGCgGAc- -3'
miRNA:   3'- -GGUC---CUCGGGGUCCUa---UGUUGaCUac -5'
29040 3' -53.3 NC_006146.1 + 33321 0.72 0.766597
Target:  5'- uCCuGGGGCUCCGGGGUccgggugcuccgggGCAGCcgGGUGg -3'
miRNA:   3'- -GGuCCUCGGGGUCCUA--------------UGUUGa-CUAC- -5'
29040 3' -53.3 NC_006146.1 + 33412 0.67 0.948497
Target:  5'- cCCGGccccGAGCUCCAGGAccggGCAGCgGAc- -3'
miRNA:   3'- -GGUC----CUCGGGGUCCUa---UGUUGaCUac -5'
29040 3' -53.3 NC_006146.1 + 33443 0.71 0.806452
Target:  5'- uCCuGGGGCUCCGGG-UGCAcCUGAa- -3'
miRNA:   3'- -GGuCCUCGGGGUCCuAUGUuGACUac -5'
29040 3' -53.3 NC_006146.1 + 33505 0.67 0.948497
Target:  5'- cCCGGccccGAGCUCCAGGAccggGCAGCgGAc- -3'
miRNA:   3'- -GGUC----CUCGGGGUCCUa---UGUUGaCUac -5'
29040 3' -53.3 NC_006146.1 + 33598 0.67 0.948497
Target:  5'- cCCGGccccGAGCUCCAGGAccggGCAGCgGAc- -3'
miRNA:   3'- -GGUC----CUCGGGGUCCUa---UGUUGaCUac -5'
29040 3' -53.3 NC_006146.1 + 33691 0.67 0.948497
Target:  5'- cCCGGccccGAGCUCCAGGAccggGCAGCgGAc- -3'
miRNA:   3'- -GGUC----CUCGGGGUCCUa---UGUUGaCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.