miRNA display CGI


Results 1 - 20 of 153 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29040 3' -53.3 NC_006146.1 + 81713 1.1 0.004825
Target:  5'- cCCAGGAGCCCCAGGAUACAACUGAUGu -3'
miRNA:   3'- -GGUCCUCGGGGUCCUAUGUUGACUAC- -5'
29040 3' -53.3 NC_006146.1 + 169061 0.68 0.929365
Target:  5'- gCCcGGGGUCCCGGGggGCGGCg---- -3'
miRNA:   3'- -GGuCCUCGGGGUCCuaUGUUGacuac -5'
29040 3' -53.3 NC_006146.1 + 169993 0.68 0.929365
Target:  5'- gCCcGGGGUCCCGGGggGCGGCg---- -3'
miRNA:   3'- -GGuCCUCGGGGUCCuaUGUUGacuac -5'
29040 3' -53.3 NC_006146.1 + 108973 0.66 0.980367
Target:  5'- aCCAGG-GCCCU-GGA-GCccCUGAUGg -3'
miRNA:   3'- -GGUCCuCGGGGuCCUaUGuuGACUAC- -5'
29040 3' -53.3 NC_006146.1 + 33443 0.71 0.806452
Target:  5'- uCCuGGGGCUCCGGG-UGCAcCUGAa- -3'
miRNA:   3'- -GGuCCUCGGGGUCCuAUGUuGACUac -5'
29040 3' -53.3 NC_006146.1 + 137609 0.71 0.806452
Target:  5'- gCCGGGuGCCCCuGGGU-CcGCUGGUu -3'
miRNA:   3'- -GGUCCuCGGGGuCCUAuGuUGACUAc -5'
29040 3' -53.3 NC_006146.1 + 79649 0.7 0.856931
Target:  5'- gCCGGcGAGCCCCccaugGGGAcgacACAGCggGAUGa -3'
miRNA:   3'- -GGUC-CUCGGGG-----UCCUa---UGUUGa-CUAC- -5'
29040 3' -53.3 NC_006146.1 + 65628 0.7 0.879461
Target:  5'- aCCucuucGAGUUCCAGGAUGCGGCucucUGGUGg -3'
miRNA:   3'- -GGuc---CUCGGGGUCCUAUGUUG----ACUAC- -5'
29040 3' -53.3 NC_006146.1 + 65117 0.69 0.893363
Target:  5'- uCUGGGAGCCCU-GGGUGCccUUGGUGc -3'
miRNA:   3'- -GGUCCUCGGGGuCCUAUGuuGACUAC- -5'
29040 3' -53.3 NC_006146.1 + 168812 0.68 0.929365
Target:  5'- -gGGGAGCCCCGGG--GCGGCccgGGg- -3'
miRNA:   3'- ggUCCUCGGGGUCCuaUGUUGa--CUac -5'
29040 3' -53.3 NC_006146.1 + 167197 0.68 0.929365
Target:  5'- gCCcGGGGUCCCGGGggGCGGCg---- -3'
miRNA:   3'- -GGuCCUCGGGGUCCuaUGUUGacuac -5'
29040 3' -53.3 NC_006146.1 + 44947 0.69 0.893363
Target:  5'- gCCAGGggcgcggggaGGCCCCGGGGgacuCGACcgcGGUGg -3'
miRNA:   3'- -GGUCC----------UCGGGGUCCUau--GUUGa--CUAC- -5'
29040 3' -53.3 NC_006146.1 + 34083 0.75 0.586873
Target:  5'- gCCGGGGGUCCCGGGggGCAGCc---- -3'
miRNA:   3'- -GGUCCUCGGGGUCCuaUGUUGacuac -5'
29040 3' -53.3 NC_006146.1 + 167880 0.68 0.929365
Target:  5'- -gGGGAGCCCCGGG--GCGGCccgGGg- -3'
miRNA:   3'- ggUCCUCGGGGUCCuaUGUUGa--CUac -5'
29040 3' -53.3 NC_006146.1 + 33321 0.72 0.766597
Target:  5'- uCCuGGGGCUCCGGGGUccgggugcuccgggGCAGCcgGGUGg -3'
miRNA:   3'- -GGuCCUCGGGGUCCUA--------------UGUUGa-CUAC- -5'
29040 3' -53.3 NC_006146.1 + 131122 0.7 0.879461
Target:  5'- gCCGGGAGCUCCGGGcc-CAAgcCUGAc- -3'
miRNA:   3'- -GGUCCUCGGGGUCCuauGUU--GACUac -5'
29040 3' -53.3 NC_006146.1 + 168129 0.68 0.929365
Target:  5'- gCCcGGGGUCCCGGGggGCGGCg---- -3'
miRNA:   3'- -GGuCCUCGGGGUCCuaUGUUGacuac -5'
29040 3' -53.3 NC_006146.1 + 169744 0.68 0.929365
Target:  5'- -gGGGAGCCCCGGG--GCGGCccgGGg- -3'
miRNA:   3'- ggUCCUCGGGGUCCuaUGUUGa--CUac -5'
29040 3' -53.3 NC_006146.1 + 853 0.72 0.797424
Target:  5'- aUAGGGGCCCUAGGA-GCAGCg---- -3'
miRNA:   3'- gGUCCUCGGGGUCCUaUGUUGacuac -5'
29040 3' -53.3 NC_006146.1 + 45132 0.7 0.848996
Target:  5'- gCCGGGAGCCUUGGGcuuUGCgGGCUGGg- -3'
miRNA:   3'- -GGUCCUCGGGGUCCu--AUG-UUGACUac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.