miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29040 5' -59.1 NC_006146.1 + 136671 0.65 0.822626
Target:  5'- gUCCUUGCGGcGGccUCCcCCCCCaugaagcGGGCg- -3'
miRNA:   3'- -GGGAAUGUC-CU--AGGuGGGGG-------CCCGaa -5'
29040 5' -59.1 NC_006146.1 + 158254 0.65 0.822626
Target:  5'- gCCCUUGagccacuCGGGGggacucuggcCCAgCCCCGGGUUg -3'
miRNA:   3'- -GGGAAU-------GUCCUa---------GGUgGGGGCCCGAa -5'
29040 5' -59.1 NC_006146.1 + 32841 0.65 0.822626
Target:  5'- gUCCUUGCGGcGGccUCCcCCCCCaugaagcGGGCg- -3'
miRNA:   3'- -GGGAAUGUC-CU--AGGuGGGGG-------CCCGaa -5'
29040 5' -59.1 NC_006146.1 + 41749 0.66 0.815064
Target:  5'- gCCCUgagACGGGugggcuucCCGCCggaggcccugcgCCCGGGCg- -3'
miRNA:   3'- -GGGAa--UGUCCua------GGUGG------------GGGCCCGaa -5'
29040 5' -59.1 NC_006146.1 + 13547 0.66 0.815064
Target:  5'- aCCUgcUGCAGGcgCCgGgCgCCGGGCUg -3'
miRNA:   3'- gGGA--AUGUCCuaGG-UgGgGGCCCGAa -5'
29040 5' -59.1 NC_006146.1 + 41607 0.66 0.815064
Target:  5'- gCCCgggggGCuGG-UCCGCUgggCCCGGGCg- -3'
miRNA:   3'- -GGGaa---UGuCCuAGGUGG---GGGCCCGaa -5'
29040 5' -59.1 NC_006146.1 + 131034 0.66 0.806511
Target:  5'- gCCU--CAGccUCCuCCCCCGGGCa- -3'
miRNA:   3'- gGGAauGUCcuAGGuGGGGGCCCGaa -5'
29040 5' -59.1 NC_006146.1 + 142498 0.66 0.801308
Target:  5'- aCUCUgccaGCAGaGAcccgggcgaucccccUCCACuCCCCGGGCc- -3'
miRNA:   3'- -GGGAa---UGUC-CU---------------AGGUG-GGGGCCCGaa -5'
29040 5' -59.1 NC_006146.1 + 145576 0.66 0.801308
Target:  5'- aCUCUgccaGCAGaGAcccgggcgaucccccUCCACuCCCCGGGCc- -3'
miRNA:   3'- -GGGAa---UGUC-CU---------------AGGUG-GGGGCCCGaa -5'
29040 5' -59.1 NC_006146.1 + 148654 0.66 0.801308
Target:  5'- aCUCUgccaGCAGaGAcccgggcgaucccccUCCACuCCCCGGGCc- -3'
miRNA:   3'- -GGGAa---UGUC-CU---------------AGGUG-GGGGCCCGaa -5'
29040 5' -59.1 NC_006146.1 + 151731 0.66 0.801308
Target:  5'- aCUCUgccaGCAGaGAcccgggcgaucccccUCCACuCCCCGGGCc- -3'
miRNA:   3'- -GGGAa---UGUC-CU---------------AGGUG-GGGGCCCGaa -5'
29040 5' -59.1 NC_006146.1 + 154809 0.66 0.801308
Target:  5'- aCUCUgccaGCAGaGAcccgggcgaucccccUCCACuCCCCGGGCc- -3'
miRNA:   3'- -GGGAa---UGUC-CU---------------AGGUG-GGGGCCCGaa -5'
29040 5' -59.1 NC_006146.1 + 157887 0.66 0.801308
Target:  5'- aCUCUgccaGCAGaGAcccgggcgaucccccUCCACuCCCCGGGCc- -3'
miRNA:   3'- -GGGAa---UGUC-CU---------------AGGUG-GGGGCCCGaa -5'
29040 5' -59.1 NC_006146.1 + 13109 0.66 0.797808
Target:  5'- gCCagGCGGGGUCCgGCCUCUccugGGGCa- -3'
miRNA:   3'- gGGaaUGUCCUAGG-UGGGGG----CCCGaa -5'
29040 5' -59.1 NC_006146.1 + 16187 0.66 0.797808
Target:  5'- gCCagGCGGGGUCCgGCCUCUccugGGGCa- -3'
miRNA:   3'- gGGaaUGUCCUAGG-UGGGGG----CCCGaa -5'
29040 5' -59.1 NC_006146.1 + 117889 0.66 0.797808
Target:  5'- aCCCgagGCuGGucAUCgACCCCCGcGGCc- -3'
miRNA:   3'- -GGGaa-UGuCC--UAGgUGGGGGC-CCGaa -5'
29040 5' -59.1 NC_006146.1 + 22343 0.66 0.797808
Target:  5'- gCCagGCGGGGUCCgGCCUCUccugGGGCa- -3'
miRNA:   3'- gGGaaUGUCCUAGG-UGGGGG----CCCGaa -5'
29040 5' -59.1 NC_006146.1 + 19265 0.66 0.797808
Target:  5'- gCCagGCGGGGUCCgGCCUCUccugGGGCa- -3'
miRNA:   3'- gGGaaUGUCCUAGG-UGGGGG----CCCGaa -5'
29040 5' -59.1 NC_006146.1 + 28499 0.66 0.797808
Target:  5'- gCCagGCGGGGUCCgGCCUCUccugGGGCa- -3'
miRNA:   3'- gGGaaUGUCCUAGG-UGGGGG----CCCGaa -5'
29040 5' -59.1 NC_006146.1 + 25421 0.66 0.797808
Target:  5'- gCCagGCGGGGUCCgGCCUCUccugGGGCa- -3'
miRNA:   3'- gGGaaUGUCCUAGG-UGGGGG----CCCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.