miRNA display CGI


Results 1 - 20 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29041 3' -55.4 NC_006146.1 + 112725 0.66 0.952606
Target:  5'- cCCUgAGGCCC---GUgUACaGGCAGGUg -3'
miRNA:   3'- -GGAgUCUGGGuugUAgGUG-CCGUCCG- -5'
29041 3' -55.4 NC_006146.1 + 88394 0.66 0.952606
Target:  5'- gCgugCAGGCCCuga--CCACGGCcuauGGCu -3'
miRNA:   3'- gGa--GUCUGGGuuguaGGUGCCGu---CCG- -5'
29041 3' -55.4 NC_006146.1 + 14560 0.66 0.952606
Target:  5'- cCCU-GGACCCAggaaacGgGUCUAUGGUuGGCu -3'
miRNA:   3'- -GGAgUCUGGGU------UgUAGGUGCCGuCCG- -5'
29041 3' -55.4 NC_006146.1 + 26872 0.66 0.952606
Target:  5'- cCCU-GGACCCAggaaacGgGUCUAUGGUuGGCu -3'
miRNA:   3'- -GGAgUCUGGGU------UgUAGGUGCCGuCCG- -5'
29041 3' -55.4 NC_006146.1 + 43447 0.66 0.952606
Target:  5'- gCCUgCGGGCCgCcACAUCUggaGCGGCAGc- -3'
miRNA:   3'- -GGA-GUCUGG-GuUGUAGG---UGCCGUCcg -5'
29041 3' -55.4 NC_006146.1 + 17638 0.66 0.952606
Target:  5'- cCCU-GGACCCAggaaacGgGUCUAUGGUuGGCu -3'
miRNA:   3'- -GGAgUCUGGGU------UgUAGGUGCCGuCCG- -5'
29041 3' -55.4 NC_006146.1 + 20716 0.66 0.952606
Target:  5'- cCCU-GGACCCAggaaacGgGUCUAUGGUuGGCu -3'
miRNA:   3'- -GGAgUCUGGGU------UgUAGGUGCCGuCCG- -5'
29041 3' -55.4 NC_006146.1 + 23794 0.66 0.952606
Target:  5'- cCCU-GGACCCAggaaacGgGUCUAUGGUuGGCu -3'
miRNA:   3'- -GGAgUCUGGGU------UgUAGGUGCCGuCCG- -5'
29041 3' -55.4 NC_006146.1 + 134933 0.66 0.952606
Target:  5'- -aUUGGGCCCuGCGca-ACGGCAGGUc -3'
miRNA:   3'- ggAGUCUGGGuUGUaggUGCCGUCCG- -5'
29041 3' -55.4 NC_006146.1 + 33100 0.66 0.952606
Target:  5'- aCCggCGGACCCccgaAGCGgaUCCGgCGGacCAGGCc -3'
miRNA:   3'- -GGa-GUCUGGG----UUGU--AGGU-GCC--GUCCG- -5'
29041 3' -55.4 NC_006146.1 + 71529 0.66 0.952606
Target:  5'- gCUCcuGGGCCuCAACG--CGCGGCccGGGCg -3'
miRNA:   3'- gGAG--UCUGG-GUUGUagGUGCCG--UCCG- -5'
29041 3' -55.4 NC_006146.1 + 55403 0.66 0.952606
Target:  5'- gCUCcgGGACCCcagGACGUaCC-UGGCuGGCa -3'
miRNA:   3'- gGAG--UCUGGG---UUGUA-GGuGCCGuCCG- -5'
29041 3' -55.4 NC_006146.1 + 11733 0.66 0.952606
Target:  5'- uUCUCGGGCguguCCAagACGaCCGgGGCAGGg -3'
miRNA:   3'- -GGAGUCUG----GGU--UGUaGGUgCCGUCCg -5'
29041 3' -55.4 NC_006146.1 + 131223 0.66 0.948514
Target:  5'- gCUgCAGGCCCAggagcccgccGCcUCCAaGGCcaAGGCa -3'
miRNA:   3'- gGA-GUCUGGGU----------UGuAGGUgCCG--UCCG- -5'
29041 3' -55.4 NC_006146.1 + 55916 0.66 0.948514
Target:  5'- gCCau-GGCCuUGAUGUCCGCGGCcguGGGCu -3'
miRNA:   3'- -GGaguCUGG-GUUGUAGGUGCCG---UCCG- -5'
29041 3' -55.4 NC_006146.1 + 59638 0.66 0.948514
Target:  5'- gCUcCAGGCCCAGgacaaugacccUAUCCGgGGCAGu- -3'
miRNA:   3'- gGA-GUCUGGGUU-----------GUAGGUgCCGUCcg -5'
29041 3' -55.4 NC_006146.1 + 130472 0.66 0.948514
Target:  5'- gCCUaCGGGgCCGcuGCcgCCcCGGguGGCu -3'
miRNA:   3'- -GGA-GUCUgGGU--UGuaGGuGCCguCCG- -5'
29041 3' -55.4 NC_006146.1 + 50073 0.66 0.948514
Target:  5'- --gCGGACguCCucuuCGUCCACGGC-GGCc -3'
miRNA:   3'- ggaGUCUG--GGuu--GUAGGUGCCGuCCG- -5'
29041 3' -55.4 NC_006146.1 + 38131 0.66 0.948514
Target:  5'- gCCUgCAgcGACCguGCGggaCCGCGGCAuccGGCc -3'
miRNA:   3'- -GGA-GU--CUGGguUGUa--GGUGCCGU---CCG- -5'
29041 3' -55.4 NC_006146.1 + 16653 0.66 0.948514
Target:  5'- aCCUgAGGCCCAcCA---GCGGCcuGGCu -3'
miRNA:   3'- -GGAgUCUGGGUuGUaggUGCCGu-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.