miRNA display CGI


Results 21 - 40 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29041 3' -55.4 NC_006146.1 + 61732 0.66 0.948514
Target:  5'- gCCaCAGACCgGcugaggaacgaGCAUCugaUugGGCAGGUg -3'
miRNA:   3'- -GGaGUCUGGgU-----------UGUAG---GugCCGUCCG- -5'
29041 3' -55.4 NC_006146.1 + 112555 0.66 0.948092
Target:  5'- gCUCAGACCCGGgGUCgugaggaUGCaGCuGGCc -3'
miRNA:   3'- gGAGUCUGGGUUgUAG-------GUGcCGuCCG- -5'
29041 3' -55.4 NC_006146.1 + 94007 0.66 0.944194
Target:  5'- aCCUCuGGcuCCCAcguGCggCC-CGGCAGGg -3'
miRNA:   3'- -GGAGuCU--GGGU---UGuaGGuGCCGUCCg -5'
29041 3' -55.4 NC_006146.1 + 132216 0.66 0.944194
Target:  5'- gCUUcCAGGCCUuuaaGGCAgcUCuCGCGGcCGGGCa -3'
miRNA:   3'- -GGA-GUCUGGG----UUGU--AG-GUGCC-GUCCG- -5'
29041 3' -55.4 NC_006146.1 + 85473 0.66 0.939644
Target:  5'- cCCUCAGGgCC----UUCACGGCcuGGCu -3'
miRNA:   3'- -GGAGUCUgGGuuguAGGUGCCGu-CCG- -5'
29041 3' -55.4 NC_006146.1 + 159682 0.66 0.939644
Target:  5'- aCUUAGcauCCCGugACAUUCACaggGGCAGGg -3'
miRNA:   3'- gGAGUCu--GGGU--UGUAGGUG---CCGUCCg -5'
29041 3' -55.4 NC_006146.1 + 46714 0.66 0.939644
Target:  5'- -gUCGG-CCgCGGCGgcUCCGaGGCGGGCg -3'
miRNA:   3'- ggAGUCuGG-GUUGU--AGGUgCCGUCCG- -5'
29041 3' -55.4 NC_006146.1 + 74804 0.66 0.939644
Target:  5'- cCCggCAGACgCAGCGcUCC-CG-CAGGCu -3'
miRNA:   3'- -GGa-GUCUGgGUUGU-AGGuGCcGUCCG- -5'
29041 3' -55.4 NC_006146.1 + 123944 0.66 0.934862
Target:  5'- cCCUCAGcUCCGGCAggUCCuuCGucuugccaaagaGCAGGCu -3'
miRNA:   3'- -GGAGUCuGGGUUGU--AGGu-GC------------CGUCCG- -5'
29041 3' -55.4 NC_006146.1 + 130117 0.66 0.934862
Target:  5'- uCCU--GuCCCAGCAggaugauggaguUCUugGGCAGGUc -3'
miRNA:   3'- -GGAguCuGGGUUGU------------AGGugCCGUCCG- -5'
29041 3' -55.4 NC_006146.1 + 140678 0.66 0.934862
Target:  5'- uCCggGGuAUCCGGCcagCC-CGGCGGGCg -3'
miRNA:   3'- -GGagUC-UGGGUUGua-GGuGCCGUCCG- -5'
29041 3' -55.4 NC_006146.1 + 27607 0.66 0.934862
Target:  5'- --aCAGACUCuccGgGUCCACuGGguGGCc -3'
miRNA:   3'- ggaGUCUGGGu--UgUAGGUG-CCguCCG- -5'
29041 3' -55.4 NC_006146.1 + 25636 0.66 0.934862
Target:  5'- cCCUCAGcUCCAAgAU-CACGGCGcuGGUc -3'
miRNA:   3'- -GGAGUCuGGGUUgUAgGUGCCGU--CCG- -5'
29041 3' -55.4 NC_006146.1 + 114325 0.66 0.934862
Target:  5'- gCUCGGcGCCCGGCcgCCccugACGG-AGGUg -3'
miRNA:   3'- gGAGUC-UGGGUUGuaGG----UGCCgUCCG- -5'
29041 3' -55.4 NC_006146.1 + 101419 0.66 0.934862
Target:  5'- -gUCGGGCCUggccaugcagGGCAUCCugGuuaagccguGCAGGUg -3'
miRNA:   3'- ggAGUCUGGG----------UUGUAGGugC---------CGUCCG- -5'
29041 3' -55.4 NC_006146.1 + 56559 0.66 0.934371
Target:  5'- --cCAGGCCCc-CGUCCaccuccgucagggGCGGcCGGGCg -3'
miRNA:   3'- ggaGUCUGGGuuGUAGG-------------UGCC-GUCCG- -5'
29041 3' -55.4 NC_006146.1 + 108526 0.66 0.934371
Target:  5'- aCCcCAGGCCgAGgcccCGUCCucguacaGCGGguGGCu -3'
miRNA:   3'- -GGaGUCUGGgUU----GUAGG-------UGCCguCCG- -5'
29041 3' -55.4 NC_006146.1 + 149111 0.66 0.934371
Target:  5'- --gCGcGCCCGGCAUCCcgcugggcuuagaAUGGUGGGCg -3'
miRNA:   3'- ggaGUcUGGGUUGUAGG-------------UGCCGUCCG- -5'
29041 3' -55.4 NC_006146.1 + 130691 0.66 0.932384
Target:  5'- cCCUCGcGugCCAACAagagaaagagagagcCCgaggaggacgaggagGCGGCGGGCu -3'
miRNA:   3'- -GGAGU-CugGGUUGUa--------------GG---------------UGCCGUCCG- -5'
29041 3' -55.4 NC_006146.1 + 26511 0.66 0.931881
Target:  5'- gCCUgGGACCCcacacacccaggcaaGACAgCCACagcguuagccuGGUGGGCg -3'
miRNA:   3'- -GGAgUCUGGG---------------UUGUaGGUG-----------CCGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.