miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29041 5' -56.4 NC_006146.1 + 155925 0.66 0.891593
Target:  5'- uAGGCuuggAUGGcGGAGCCggCgaugacgguggagguGGCCCCGGg -3'
miRNA:   3'- -UUUGua--UACC-CCUCGGa-G---------------UCGGGGUC- -5'
29041 5' -56.4 NC_006146.1 + 152847 0.66 0.891593
Target:  5'- uAGGCuuggAUGGcGGAGCCggCgaugacgguggagguGGCCCCGGg -3'
miRNA:   3'- -UUUGua--UACC-CCUCGGa-G---------------UCGGGGUC- -5'
29041 5' -56.4 NC_006146.1 + 149769 0.66 0.891593
Target:  5'- uAGGCuuggAUGGcGGAGCCggCgaugacgguggagguGGCCCCGGg -3'
miRNA:   3'- -UUUGua--UACC-CCUCGGa-G---------------UCGGGGUC- -5'
29041 5' -56.4 NC_006146.1 + 143614 0.66 0.891593
Target:  5'- uAGGCuuggAUGGcGGAGCCggCgaugacgguggagguGGCCCCGGg -3'
miRNA:   3'- -UUUGua--UACC-CCUCGGa-G---------------UCGGGGUC- -5'
29041 5' -56.4 NC_006146.1 + 68976 0.66 0.888866
Target:  5'- aGAGCcgcugAUaGGGAGCCcaaaaccuUCAGCUCCAGa -3'
miRNA:   3'- -UUUGua---UAcCCCUCGG--------AGUCGGGGUC- -5'
29041 5' -56.4 NC_006146.1 + 61877 0.66 0.881887
Target:  5'- -cACGUcUGGGGAggcauGCCUCA-CCCUGGa -3'
miRNA:   3'- uuUGUAuACCCCU-----CGGAGUcGGGGUC- -5'
29041 5' -56.4 NC_006146.1 + 100103 0.66 0.881887
Target:  5'- cGGACG-GUGGacaGGAGUCUgCGGUCCCGGg -3'
miRNA:   3'- -UUUGUaUACC---CCUCGGA-GUCGGGGUC- -5'
29041 5' -56.4 NC_006146.1 + 155589 0.66 0.881887
Target:  5'- gGGGCAcaccGGGGcuGGCCUcCGGCCCCu- -3'
miRNA:   3'- -UUUGUaua-CCCC--UCGGA-GUCGGGGuc -5'
29041 5' -56.4 NC_006146.1 + 100725 0.66 0.881887
Target:  5'- ---gGUGUGGGaccGGCCUCGccggccaccagcGCCCCGGc -3'
miRNA:   3'- uuugUAUACCCc--UCGGAGU------------CGGGGUC- -5'
29041 5' -56.4 NC_006146.1 + 77290 0.66 0.867255
Target:  5'- -------cGGGGAGgacagCAGCCCCAGg -3'
miRNA:   3'- uuuguauaCCCCUCgga--GUCGGGGUC- -5'
29041 5' -56.4 NC_006146.1 + 121825 0.67 0.851761
Target:  5'- -cACAgcc--GGAGCCUCAGCCCUc- -3'
miRNA:   3'- uuUGUauaccCCUCGGAGUCGGGGuc -5'
29041 5' -56.4 NC_006146.1 + 23904 0.67 0.851761
Target:  5'- gAAGCG-AUGGGGGgcgaagauugcGCC-CAGCCCCu- -3'
miRNA:   3'- -UUUGUaUACCCCU-----------CGGaGUCGGGGuc -5'
29041 5' -56.4 NC_006146.1 + 138786 0.67 0.843705
Target:  5'- -uACGUGcUGGGaGAGCUUCGGaugggCCCGGg -3'
miRNA:   3'- uuUGUAU-ACCC-CUCGGAGUCg----GGGUC- -5'
29041 5' -56.4 NC_006146.1 + 142968 0.67 0.835453
Target:  5'- -uGCAUGccaGGGGGCUUCcGCCCUAGc -3'
miRNA:   3'- uuUGUAUac-CCCUCGGAGuCGGGGUC- -5'
29041 5' -56.4 NC_006146.1 + 18951 0.67 0.835453
Target:  5'- aGGGCAUGUGGuGcGCCagCGGCCCCuAGa -3'
miRNA:   3'- -UUUGUAUACCcCuCGGa-GUCGGGG-UC- -5'
29041 5' -56.4 NC_006146.1 + 26496 0.67 0.835453
Target:  5'- gAGAUGUGUGGGcuuGCCUgGGaCCCCAc -3'
miRNA:   3'- -UUUGUAUACCCcu-CGGAgUC-GGGGUc -5'
29041 5' -56.4 NC_006146.1 + 145452 0.67 0.827013
Target:  5'- gGGAgGUccGGGGuguugAGCCUgCuGCCCCAGg -3'
miRNA:   3'- -UUUgUAuaCCCC-----UCGGA-GuCGGGGUC- -5'
29041 5' -56.4 NC_006146.1 + 148530 0.67 0.827013
Target:  5'- gGGAgGUccGGGGuguugAGCCUgCuGCCCCAGg -3'
miRNA:   3'- -UUUgUAuaCCCC-----UCGGA-GuCGGGGUC- -5'
29041 5' -56.4 NC_006146.1 + 15294 0.67 0.827013
Target:  5'- gGAGCGag-GGGGAggagggGCCggaggcCAGCCCCGGu -3'
miRNA:   3'- -UUUGUauaCCCCU------CGGa-----GUCGGGGUC- -5'
29041 5' -56.4 NC_006146.1 + 151608 0.67 0.827013
Target:  5'- gGGAgGUccGGGGuguugAGCCUgCuGCCCCAGg -3'
miRNA:   3'- -UUUgUAuaCCCC-----UCGGA-GuCGGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.