miRNA display CGI


Results 41 - 60 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 3' -56.7 NC_006146.1 + 130511 0.66 0.872535
Target:  5'- aGGUcuagGguGCUGuCAGCAGCCacaauCCGGGCa -3'
miRNA:   3'- cUCAa---CguCGGU-GUUGUCGG-----GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 142651 0.66 0.872535
Target:  5'- ---cUGCccAGCCACc-CAGCcucgCCCAGGCg -3'
miRNA:   3'- cucaACG--UCGGUGuuGUCG----GGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 3007 0.66 0.857452
Target:  5'- ---gUGCccCCGCGAgGGuCCCCGGGCc -3'
miRNA:   3'- cucaACGucGGUGUUgUC-GGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 87216 0.67 0.833308
Target:  5'- aGGUgGCGGCCGCAGCcaucaCCUGGGUg -3'
miRNA:   3'- cUCAaCGUCGGUGUUGucg--GGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 46356 0.67 0.816279
Target:  5'- uGAGgaccGCGuCCgACAGCAGCuccCCCAGGCc -3'
miRNA:   3'- -CUCaa--CGUcGG-UGUUGUCG---GGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 40145 0.67 0.824882
Target:  5'- aGGGggGCuGGCCAUaccuggaguuGACGGCgaCCCGGGUg -3'
miRNA:   3'- -CUCaaCG-UCGGUG----------UUGUCG--GGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 54235 0.67 0.824882
Target:  5'- cGGgaGCAGagccuCugGGCGGCCCCggucAGGCg -3'
miRNA:   3'- cUCaaCGUCg----GugUUGUCGGGG----UCCG- -5'
29042 3' -56.7 NC_006146.1 + 94784 0.67 0.824882
Target:  5'- cAGUUGCgGGCCACGuccacguaggcCAGgCCCGGGg -3'
miRNA:   3'- cUCAACG-UCGGUGUu----------GUCgGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 156565 0.67 0.824882
Target:  5'- ----aGCagGGCCGCAACGGCCCU--GCg -3'
miRNA:   3'- cucaaCG--UCGGUGUUGUCGGGGucCG- -5'
29042 3' -56.7 NC_006146.1 + 3726 0.67 0.824882
Target:  5'- aGGGUcucugGgGGCCGCGuggcccuuCAGCCCgGGGUg -3'
miRNA:   3'- -CUCAa----CgUCGGUGUu-------GUCGGGgUCCG- -5'
29042 3' -56.7 NC_006146.1 + 132625 0.67 0.807509
Target:  5'- aAGaUGUcuGCCACAG-AGCCCUAGGUg -3'
miRNA:   3'- cUCaACGu-CGGUGUUgUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 127515 0.67 0.807509
Target:  5'- cGGGgcagagGCAGCCGCuGCuGCCCCc-GCu -3'
miRNA:   3'- -CUCaa----CGUCGGUGuUGuCGGGGucCG- -5'
29042 3' -56.7 NC_006146.1 + 15304 0.67 0.84155
Target:  5'- gGAGgaGgGGCCGgAGgcCAGCCCCGGuGUg -3'
miRNA:   3'- -CUCaaCgUCGGUgUU--GUCGGGGUC-CG- -5'
29042 3' -56.7 NC_006146.1 + 143624 0.67 0.833308
Target:  5'- -uGgcGgAGCCgGCGAUgacgguggagguGGCCCCGGGCg -3'
miRNA:   3'- cuCaaCgUCGG-UGUUG------------UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 149779 0.67 0.833308
Target:  5'- -uGgcGgAGCCgGCGAUgacgguggagguGGCCCCGGGCg -3'
miRNA:   3'- cuCaaCgUCGG-UGUUG------------UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 152857 0.67 0.833308
Target:  5'- -uGgcGgAGCCgGCGAUgacgguggagguGGCCCCGGGCg -3'
miRNA:   3'- cuCaaCgUCGG-UGUUG------------UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 155935 0.67 0.833308
Target:  5'- -uGgcGgAGCCgGCGAUgacgguggagguGGCCCCGGGCg -3'
miRNA:   3'- cuCaaCgUCGG-UGUUG------------UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 92084 0.67 0.833308
Target:  5'- uGGGggGCGGCC----CGGCCUgGGGCu -3'
miRNA:   3'- -CUCaaCGUCGGuguuGUCGGGgUCCG- -5'
29042 3' -56.7 NC_006146.1 + 115519 0.67 0.833308
Target:  5'- ---aUGCuGGCCuc-GguGCCCCGGGCg -3'
miRNA:   3'- cucaACG-UCGGuguUguCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 140699 0.67 0.807509
Target:  5'- ----gGCGGgCGCAGCGGCCCUcuGCu -3'
miRNA:   3'- cucaaCGUCgGUGUUGUCGGGGucCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.