Results 61 - 80 of 217 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29042 | 3' | -56.7 | NC_006146.1 | + | 155714 | 0.67 | 0.8496 |
Target: 5'- aGGUgaagGCGGCCGCGcaguCGGCCUuCAGcGCu -3' miRNA: 3'- cUCAa---CGUCGGUGUu---GUCGGG-GUC-CG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 86469 | 0.67 | 0.819741 |
Target: 5'- uGAGgggGCAGCCugGGCuuugaggggcagcugGGCCUUgagGGGCa -3' miRNA: 3'- -CUCaa-CGUCGGugUUG---------------UCGGGG---UCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 36757 | 0.67 | 0.824882 |
Target: 5'- aGGGUUccGCAgGCCGCGuaaggggguGGCCCUAGGUg -3' miRNA: 3'- -CUCAA--CGU-CGGUGUug-------UCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 84962 | 0.67 | 0.824882 |
Target: 5'- gGGGggGCaaagucccgcaGGCCAUccaGGCCCCAGGg -3' miRNA: 3'- -CUCaaCG-----------UCGGUGuugUCGGGGUCCg -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 50051 | 0.67 | 0.824882 |
Target: 5'- gGAGgcGCAGUC-CAGCAGgccCUCCAGGa -3' miRNA: 3'- -CUCaaCGUCGGuGUUGUC---GGGGUCCg -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 53005 | 0.67 | 0.824882 |
Target: 5'- ----cGUGGCCGCGGgggucgaugacCAGCCUCGGGUg -3' miRNA: 3'- cucaaCGUCGGUGUU-----------GUCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 142797 | 0.67 | 0.824882 |
Target: 5'- --cUUGCuGGCCcCAAUGGCCgCGGGCc -3' miRNA: 3'- cucAACG-UCGGuGUUGUCGGgGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 145875 | 0.67 | 0.824882 |
Target: 5'- --cUUGCuGGCCcCAAUGGCCgCGGGCc -3' miRNA: 3'- cucAACG-UCGGuGUUGUCGGgGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 148953 | 0.67 | 0.824882 |
Target: 5'- --cUUGCuGGCCcCAAUGGCCgCGGGCc -3' miRNA: 3'- cucAACG-UCGGuGUUGUCGGgGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 122837 | 0.67 | 0.816279 |
Target: 5'- cGAGUacGUGGaCCGCAcGCuGCCCgGGGCg -3' miRNA: 3'- -CUCAa-CGUC-GGUGU-UGuCGGGgUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 128215 | 0.67 | 0.816279 |
Target: 5'- gGGGgcucUGcCAGCCucaGGCAGCCCaccgCGGGCg -3' miRNA: 3'- -CUCa---AC-GUCGGug-UUGUCGGG----GUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 30200 | 0.67 | 0.811036 |
Target: 5'- uGAGgaGCaggAGCCAgAAcCAGCCCCcacuaugguagagaaGGGCa -3' miRNA: 3'- -CUCaaCG---UCGGUgUU-GUCGGGG---------------UCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 92700 | 0.67 | 0.8496 |
Target: 5'- gGAGg-GCAGUgACAGCGaCCCCucguGGCg -3' miRNA: 3'- -CUCaaCGUCGgUGUUGUcGGGGu---CCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 73336 | 0.67 | 0.8496 |
Target: 5'- ---gUGCAGauuCGCaAACAGCCCCuucuuuaauAGGCa -3' miRNA: 3'- cucaACGUCg--GUG-UUGUCGGGG---------UCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 33125 | 0.67 | 0.8496 |
Target: 5'- cGGGUUcGCcgGGCCGCuGCcccGCUCCGGGUg -3' miRNA: 3'- -CUCAA-CG--UCGGUGuUGu--CGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 114212 | 0.67 | 0.8496 |
Target: 5'- aGGUUGUccAGCagggcCAGCCCCAGGg -3' miRNA: 3'- cUCAACG--UCGguguuGUCGGGGUCCg -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 44760 | 0.67 | 0.8496 |
Target: 5'- uGGUUGUcggGGCC-CGGCGGgcggggaaCCCAGGCc -3' miRNA: 3'- cUCAACG---UCGGuGUUGUCg-------GGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 154245 | 0.67 | 0.8496 |
Target: 5'- -cGUUaGCcaGGCCGCugGugGGCCUCAGGUu -3' miRNA: 3'- cuCAA-CG--UCGGUG--UugUCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 127515 | 0.67 | 0.807509 |
Target: 5'- cGGGgcagagGCAGCCGCuGCuGCCCCc-GCu -3' miRNA: 3'- -CUCaa----CGUCGGUGuUGuCGGGGucCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 140699 | 0.67 | 0.807509 |
Target: 5'- ----gGCGGgCGCAGCGGCCCUcuGCu -3' miRNA: 3'- cucaaCGUCgGUGUUGUCGGGGucCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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