miRNA display CGI


Results 101 - 120 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 3' -56.7 NC_006146.1 + 156050 0.68 0.751831
Target:  5'- uGGcUGCccccucGGCCucCcGCGGCCCCGGGCc -3'
miRNA:   3'- cUCaACG------UCGGu-GuUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 39994 0.68 0.74893
Target:  5'- uGAGUggGUGGCC-CGGCAGCCUUugaccggucagacgGGGCa -3'
miRNA:   3'- -CUCAa-CGUCGGuGUUGUCGGGG--------------UCCG- -5'
29042 3' -56.7 NC_006146.1 + 4366 0.68 0.751831
Target:  5'- ----cGUGGCCACGgccccGCGGgcuCCCCAGGCc -3'
miRNA:   3'- cucaaCGUCGGUGU-----UGUC---GGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 60876 0.68 0.761429
Target:  5'- ---aUGCAGCCccuGCAGacCGGCCUgGGGCc -3'
miRNA:   3'- cucaACGUCGG---UGUU--GUCGGGgUCCG- -5'
29042 3' -56.7 NC_006146.1 + 94022 0.68 0.770912
Target:  5'- ---gUGCGGCCcgGCAggggcACGGCCCCGaGCg -3'
miRNA:   3'- cucaACGUCGG--UGU-----UGUCGGGGUcCG- -5'
29042 3' -56.7 NC_006146.1 + 140137 0.68 0.761429
Target:  5'- gGAGgUGguGgCGgGGguGCCCCGGGUa -3'
miRNA:   3'- -CUCaACguCgGUgUUguCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 31652 0.68 0.770912
Target:  5'- ----aGCAGUCACAaacACA-CCUCAGGCa -3'
miRNA:   3'- cucaaCGUCGGUGU---UGUcGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 212 0.68 0.770912
Target:  5'- ---gUGCccCCGCGACGGUCCCcgGGGCg -3'
miRNA:   3'- cucaACGucGGUGUUGUCGGGG--UCCG- -5'
29042 3' -56.7 NC_006146.1 + 62424 0.68 0.761429
Target:  5'- cGGGUggGCuGGCUgaAGCGGCCuCCGGGCu -3'
miRNA:   3'- -CUCAa-CG-UCGGugUUGUCGG-GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 28740 0.68 0.780271
Target:  5'- ----aGCAGCCACAuCAuCCCCAaagGGCc -3'
miRNA:   3'- cucaaCGUCGGUGUuGUcGGGGU---CCG- -5'
29042 3' -56.7 NC_006146.1 + 51540 0.68 0.780271
Target:  5'- gGAGUcgggGCAGCCGCcguACGugauGaCCCUGGGCg -3'
miRNA:   3'- -CUCAa---CGUCGGUGu--UGU----C-GGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 114590 0.68 0.789496
Target:  5'- -cGgcGCAGCUACGGCcugGGCCaCCucgAGGCg -3'
miRNA:   3'- cuCaaCGUCGGUGUUG---UCGG-GG---UCCG- -5'
29042 3' -56.7 NC_006146.1 + 146703 0.68 0.798578
Target:  5'- ----gGCgAGCCgGCGAUgacgguggagguGGCCCCGGGCg -3'
miRNA:   3'- cucaaCG-UCGG-UGUUG------------UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 123170 0.68 0.798578
Target:  5'- cGAGga--GGCCccggACGACgAGCUCCGGGCg -3'
miRNA:   3'- -CUCaacgUCGG----UGUUG-UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 48027 0.68 0.789496
Target:  5'- gGAGgcacgGCGGgCCGgcucgggucgucCAGC-GCCCCGGGCa -3'
miRNA:   3'- -CUCaa---CGUC-GGU------------GUUGuCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 110199 0.68 0.780271
Target:  5'- gGAGaUGCGGCCccauGCAGuuGCCCgugaGGGCa -3'
miRNA:   3'- -CUCaACGUCGG----UGUUguCGGGg---UCCG- -5'
29042 3' -56.7 NC_006146.1 + 113333 0.68 0.770912
Target:  5'- gGGGUUGaAGCCGaagcugauCAGCCCCAGuaGCg -3'
miRNA:   3'- -CUCAACgUCGGUguu-----GUCGGGGUC--CG- -5'
29042 3' -56.7 NC_006146.1 + 131078 0.68 0.780271
Target:  5'- ---gUGCGGCCGa---GGCCgCCGGGCc -3'
miRNA:   3'- cucaACGUCGGUguugUCGG-GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 44188 0.68 0.761429
Target:  5'- aGAGgcacgcGCGGCUGCAcuGCAGCCggGGGCg -3'
miRNA:   3'- -CUCaa----CGUCGGUGU--UGUCGGggUCCG- -5'
29042 3' -56.7 NC_006146.1 + 91022 0.68 0.780271
Target:  5'- aGAGgcaUGCucaCCACGACAGCUUCAuaGGCg -3'
miRNA:   3'- -CUCa--ACGuc-GGUGUUGUCGGGGU--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.