Results 121 - 140 of 217 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29042 | 3' | -56.7 | NC_006146.1 | + | 140137 | 0.68 | 0.761429 |
Target: 5'- gGAGgUGguGgCGgGGguGCCCCGGGUa -3' miRNA: 3'- -CUCaACguCgGUgUUguCGGGGUCCG- -5' |
|||||||
29042 | 3' | -56.7 | NC_006146.1 | + | 62424 | 0.68 | 0.761429 |
Target: 5'- cGGGUggGCuGGCUgaAGCGGCCuCCGGGCu -3' miRNA: 3'- -CUCAa-CG-UCGGugUUGUCGG-GGUCCG- -5' |
|||||||
29042 | 3' | -56.7 | NC_006146.1 | + | 125358 | 0.68 | 0.751831 |
Target: 5'- gGAGgccaggGCGGCCAagcccaAGgAGgCCCAGGCc -3' miRNA: 3'- -CUCaa----CGUCGGUg-----UUgUCgGGGUCCG- -5' |
|||||||
29042 | 3' | -56.7 | NC_006146.1 | + | 114590 | 0.68 | 0.789496 |
Target: 5'- -cGgcGCAGCUACGGCcugGGCCaCCucgAGGCg -3' miRNA: 3'- cuCaaCGUCGGUGUUG---UCGG-GG---UCCG- -5' |
|||||||
29042 | 3' | -56.7 | NC_006146.1 | + | 123170 | 0.68 | 0.798578 |
Target: 5'- cGAGga--GGCCccggACGACgAGCUCCGGGCg -3' miRNA: 3'- -CUCaacgUCGG----UGUUG-UCGGGGUCCG- -5' |
|||||||
29042 | 3' | -56.7 | NC_006146.1 | + | 40984 | 0.69 | 0.722436 |
Target: 5'- ---gUGguGCCGCGccgGC-GCCCCAGGg -3' miRNA: 3'- cucaACguCGGUGU---UGuCGGGGUCCg -5' |
|||||||
29042 | 3' | -56.7 | NC_006146.1 | + | 16707 | 0.69 | 0.71247 |
Target: 5'- ----cGCAGguCCACGAC-GCCCCGGGg -3' miRNA: 3'- cucaaCGUC--GGUGUUGuCGGGGUCCg -5' |
|||||||
29042 | 3' | -56.7 | NC_006146.1 | + | 77282 | 0.69 | 0.71247 |
Target: 5'- -----uCGGCCuccggggaggACAGCAGCCCCAGGa -3' miRNA: 3'- cucaacGUCGG----------UGUUGUCGGGGUCCg -5' |
|||||||
29042 | 3' | -56.7 | NC_006146.1 | + | 101582 | 0.69 | 0.742126 |
Target: 5'- gGAGUUGgAGCCaACGACgAGgCCCAGa- -3' miRNA: 3'- -CUCAACgUCGG-UGUUG-UCgGGGUCcg -5' |
|||||||
29042 | 3' | -56.7 | NC_006146.1 | + | 128186 | 0.69 | 0.742126 |
Target: 5'- cGGGagGCGGCC-CAggggggcgccGCGGCgCCGGGCc -3' miRNA: 3'- -CUCaaCGUCGGuGU----------UGUCGgGGUCCG- -5' |
|||||||
29042 | 3' | -56.7 | NC_006146.1 | + | 137926 | 0.69 | 0.742126 |
Target: 5'- cGGggGCAGCCGCGACccagcgcGCCCCguucacGGGg -3' miRNA: 3'- cUCaaCGUCGGUGUUGu------CGGGG------UCCg -5' |
|||||||
29042 | 3' | -56.7 | NC_006146.1 | + | 23121 | 0.69 | 0.722436 |
Target: 5'- ----cGCAGCCGCccagucuCuGCCuCCAGGCa -3' miRNA: 3'- cucaaCGUCGGUGuu-----GuCGG-GGUCCG- -5' |
|||||||
29042 | 3' | -56.7 | NC_006146.1 | + | 4964 | 0.69 | 0.722436 |
Target: 5'- ----aGgGGCCACGAgAGCCuCCuGGCg -3' miRNA: 3'- cucaaCgUCGGUGUUgUCGG-GGuCCG- -5' |
|||||||
29042 | 3' | -56.7 | NC_006146.1 | + | 20043 | 0.69 | 0.722436 |
Target: 5'- ----cGCAGCCGCccagucuCuGCCuCCAGGCa -3' miRNA: 3'- cucaaCGUCGGUGuu-----GuCGG-GGUCCG- -5' |
|||||||
29042 | 3' | -56.7 | NC_006146.1 | + | 79127 | 0.69 | 0.702434 |
Target: 5'- cGGGUgcCAG-CACGGCA-CCCCAGGCa -3' miRNA: 3'- -CUCAacGUCgGUGUUGUcGGGGUCCG- -5' |
|||||||
29042 | 3' | -56.7 | NC_006146.1 | + | 74894 | 0.69 | 0.702434 |
Target: 5'- uAGUUucaGCGGUCGaGAUcccaaGGCCCCAGGCa -3' miRNA: 3'- cUCAA---CGUCGGUgUUG-----UCGGGGUCCG- -5' |
|||||||
29042 | 3' | -56.7 | NC_006146.1 | + | 47294 | 0.69 | 0.702434 |
Target: 5'- -cGUccUGCAGCCGgGACuccUCCCGGGCc -3' miRNA: 3'- cuCA--ACGUCGGUgUUGuc-GGGGUCCG- -5' |
|||||||
29042 | 3' | -56.7 | NC_006146.1 | + | 120006 | 0.69 | 0.702434 |
Target: 5'- gGAGgcccaGGCCGCAcccGCGGCCaguCCGGGCa -3' miRNA: 3'- -CUCaacg-UCGGUGU---UGUCGG---GGUCCG- -5' |
|||||||
29042 | 3' | -56.7 | NC_006146.1 | + | 29277 | 0.69 | 0.722436 |
Target: 5'- ----cGCAGCCGCccagucuCuGCCuCCAGGCa -3' miRNA: 3'- cucaaCGUCGGUGuu-----GuCGG-GGUCCG- -5' |
|||||||
29042 | 3' | -56.7 | NC_006146.1 | + | 26199 | 0.69 | 0.722436 |
Target: 5'- ----cGCAGCCGCccagucuCuGCCuCCAGGCa -3' miRNA: 3'- cucaaCGUCGGUGuu-----GuCGG-GGUCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home