Results 41 - 60 of 217 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29042 | 3' | -56.7 | NC_006146.1 | + | 160152 | 0.72 | 0.549543 |
Target: 5'- aAGUagaUGUAGCCGC-AUGGCCCC-GGCu -3' miRNA: 3'- cUCA---ACGUCGGUGuUGUCGGGGuCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 24048 | 0.72 | 0.569701 |
Target: 5'- gGGGUgacGCGGCCcCGAgcCAGgCCCGGGCu -3' miRNA: 3'- -CUCAa--CGUCGGuGUU--GUCgGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 65909 | 0.71 | 0.596163 |
Target: 5'- aGAGUUGagugucuccccagAGCCcccuCGGgAGCCCCAGGCc -3' miRNA: 3'- -CUCAACg------------UCGGu---GUUgUCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 158040 | 0.71 | 0.600253 |
Target: 5'- ---cUGCccAGCCACccAGCcucGCCCCAGGCg -3' miRNA: 3'- cucaACG--UCGGUG--UUGu--CGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 72190 | 0.71 | 0.621778 |
Target: 5'- cGAGgacgcgGCGGCCGgaugggcgggagacCAGCGGCCCCacccacugcgcgugaAGGCa -3' miRNA: 3'- -CUCaa----CGUCGGU--------------GUUGUCGGGG---------------UCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 34094 | 0.71 | 0.600253 |
Target: 5'- cGGGggGCAGCCGCGACccagcgcGCCCCguucacGGGg -3' miRNA: 3'- -CUCaaCGUCGGUGUUGu------CGGGG------UCCg -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 39821 | 0.71 | 0.631017 |
Target: 5'- -cGUUGaCGGCC-CGGCGGCCUC-GGCc -3' miRNA: 3'- cuCAAC-GUCGGuGUUGUCGGGGuCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 123264 | 0.71 | 0.631017 |
Target: 5'- cGGGccGCGGCCAgaGACGGCUCguGGCc -3' miRNA: 3'- -CUCaaCGUCGGUg-UUGUCGGGguCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 123499 | 0.71 | 0.57985 |
Target: 5'- uGAGgcugGCccuGGCCACGGuCGaCCCCAGGCg -3' miRNA: 3'- -CUCaa--CG---UCGGUGUU-GUcGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 139055 | 0.7 | 0.661787 |
Target: 5'- cGGGUaacugGCGGCCACcauACGGgCCCugguGGCg -3' miRNA: 3'- -CUCAa----CGUCGGUGu--UGUCgGGGu---CCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 1763 | 0.7 | 0.692339 |
Target: 5'- ----cGcCGGCCAUccccacgcGCGGCCCCGGGCc -3' miRNA: 3'- cucaaC-GUCGGUGu-------UGUCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 831 | 0.7 | 0.692339 |
Target: 5'- ----cGcCGGCCAUccccacgcGCGGCCCCGGGCc -3' miRNA: 3'- cucaaC-GUCGGUGu-------UGUCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 152282 | 0.7 | 0.692339 |
Target: 5'- aGAGggGCccgagGGCCugAAaGGCCCCGGcGCc -3' miRNA: 3'- -CUCaaCG-----UCGGugUUgUCGGGGUC-CG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 83628 | 0.7 | 0.692339 |
Target: 5'- gGAGUaGUAGCU-CAGCAGCUCCAGa- -3' miRNA: 3'- -CUCAaCGUCGGuGUUGUCGGGGUCcg -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 146126 | 0.7 | 0.692339 |
Target: 5'- aGAGggGCccgagGGCCugAAaGGCCCCGGcGCc -3' miRNA: 3'- -CUCaaCG-----UCGGugUUgUCGGGGUC-CG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 58507 | 0.7 | 0.682194 |
Target: 5'- -----aCAGgCACGGCAGCCCCugcGGCg -3' miRNA: 3'- cucaacGUCgGUGUUGUCGGGGu--CCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 117875 | 0.7 | 0.651543 |
Target: 5'- cGGcgGCGGCCGCGGCcagccgcgugaGGCCCaGGGCc -3' miRNA: 3'- cUCaaCGUCGGUGUUG-----------UCGGGgUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 158439 | 0.7 | 0.692339 |
Target: 5'- aGAGggGCccgagGGCCugAAaGGCCCCGGcGCc -3' miRNA: 3'- -CUCaaCG-----UCGGugUUgUCGGGGUC-CG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 149204 | 0.7 | 0.692339 |
Target: 5'- aGAGggGCccgagGGCCugAAaGGCCCCGGcGCc -3' miRNA: 3'- -CUCaaCG-----UCGGugUUgUCGGGGUC-CG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 2695 | 0.7 | 0.692339 |
Target: 5'- ----cGcCGGCCAUccccacgcGCGGCCCCGGGCc -3' miRNA: 3'- cucaaC-GUCGGUGu-------UGUCGGGGUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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