miRNA display CGI


Results 81 - 100 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 3' -56.7 NC_006146.1 + 77282 0.69 0.71247
Target:  5'- -----uCGGCCuccggggaggACAGCAGCCCCAGGa -3'
miRNA:   3'- cucaacGUCGG----------UGUUGUCGGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 29277 0.69 0.722436
Target:  5'- ----cGCAGCCGCccagucuCuGCCuCCAGGCa -3'
miRNA:   3'- cucaaCGUCGGUGuu-----GuCGG-GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 26199 0.69 0.722436
Target:  5'- ----cGCAGCCGCccagucuCuGCCuCCAGGCa -3'
miRNA:   3'- cucaaCGUCGGUGuu-----GuCGG-GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 23121 0.69 0.722436
Target:  5'- ----cGCAGCCGCccagucuCuGCCuCCAGGCa -3'
miRNA:   3'- cucaaCGUCGGUGuu-----GuCGG-GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 20043 0.69 0.722436
Target:  5'- ----cGCAGCCGCccagucuCuGCCuCCAGGCa -3'
miRNA:   3'- cucaaCGUCGGUGuu-----GuCGG-GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 13888 0.69 0.722436
Target:  5'- ----cGCAGCCGCccagucuCuGCCuCCAGGCa -3'
miRNA:   3'- cucaaCGUCGGUGuu-----GuCGG-GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 4964 0.69 0.722436
Target:  5'- ----aGgGGCCACGAgAGCCuCCuGGCg -3'
miRNA:   3'- cucaaCgUCGGUGUUgUCGG-GGuCCG- -5'
29042 3' -56.7 NC_006146.1 + 40984 0.69 0.722436
Target:  5'- ---gUGguGCCGCGccgGC-GCCCCAGGg -3'
miRNA:   3'- cucaACguCGGUGU---UGuCGGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 114038 0.69 0.732325
Target:  5'- ----gGCGGCCGC--CAGCCCCAGcCa -3'
miRNA:   3'- cucaaCGUCGGUGuuGUCGGGGUCcG- -5'
29042 3' -56.7 NC_006146.1 + 101582 0.69 0.742126
Target:  5'- gGAGUUGgAGCCaACGACgAGgCCCAGa- -3'
miRNA:   3'- -CUCAACgUCGG-UGUUG-UCgGGGUCcg -5'
29042 3' -56.7 NC_006146.1 + 137926 0.69 0.742126
Target:  5'- cGGggGCAGCCGCGACccagcgcGCCCCguucacGGGg -3'
miRNA:   3'- cUCaaCGUCGGUGUUGu------CGGGG------UCCg -5'
29042 3' -56.7 NC_006146.1 + 128186 0.69 0.742126
Target:  5'- cGGGagGCGGCC-CAggggggcgccGCGGCgCCGGGCc -3'
miRNA:   3'- -CUCaaCGUCGGuGU----------UGUCGgGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 39994 0.68 0.74893
Target:  5'- uGAGUggGUGGCC-CGGCAGCCUUugaccggucagacgGGGCa -3'
miRNA:   3'- -CUCAa-CGUCGGuGUUGUCGGGG--------------UCCG- -5'
29042 3' -56.7 NC_006146.1 + 125358 0.68 0.751831
Target:  5'- gGAGgccaggGCGGCCAagcccaAGgAGgCCCAGGCc -3'
miRNA:   3'- -CUCaa----CGUCGGUg-----UUgUCgGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 156050 0.68 0.751831
Target:  5'- uGGcUGCccccucGGCCucCcGCGGCCCCGGGCc -3'
miRNA:   3'- cUCaACG------UCGGu-GuUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 82142 0.68 0.751831
Target:  5'- gGAGUcucagccuCAGCCACAAgAGCCCCu-GCa -3'
miRNA:   3'- -CUCAac------GUCGGUGUUgUCGGGGucCG- -5'
29042 3' -56.7 NC_006146.1 + 4366 0.68 0.751831
Target:  5'- ----cGUGGCCACGgccccGCGGgcuCCCCAGGCc -3'
miRNA:   3'- cucaaCGUCGGUGU-----UGUC---GGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 146449 0.68 0.751831
Target:  5'- cGAGUggGCGGuCCACAcacgcgggcGCAGCaCCCAuugguugcaGGCg -3'
miRNA:   3'- -CUCAa-CGUC-GGUGU---------UGUCG-GGGU---------CCG- -5'
29042 3' -56.7 NC_006146.1 + 82365 0.68 0.752796
Target:  5'- cGGaUGCAGCCAuCgcgggcuccacacccGgguuacagggagauACAGCCCCAGGCc -3'
miRNA:   3'- cUCaACGUCGGU-G---------------U--------------UGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 62424 0.68 0.761429
Target:  5'- cGGGUggGCuGGCUgaAGCGGCCuCCGGGCu -3'
miRNA:   3'- -CUCAa-CG-UCGGugUUGUCGG-GGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.