miRNA display CGI


Results 81 - 100 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 3' -56.7 NC_006146.1 + 53005 0.67 0.824882
Target:  5'- ----cGUGGCCGCGGgggucgaugacCAGCCUCGGGUg -3'
miRNA:   3'- cucaaCGUCGGUGUU-----------GUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 66781 0.67 0.824882
Target:  5'- cGGGgUGCGaCCugGACaccGGgCCCAGGCg -3'
miRNA:   3'- -CUCaACGUcGGugUUG---UCgGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 43384 0.67 0.824882
Target:  5'- cGGggGCAGCaGCGGCugccucuGCCCC-GGCu -3'
miRNA:   3'- cUCaaCGUCGgUGUUGu------CGGGGuCCG- -5'
29042 3' -56.7 NC_006146.1 + 54235 0.67 0.824882
Target:  5'- cGGgaGCAGagccuCugGGCGGCCCCggucAGGCg -3'
miRNA:   3'- cUCaaCGUCg----GugUUGUCGGGG----UCCG- -5'
29042 3' -56.7 NC_006146.1 + 40145 0.67 0.824882
Target:  5'- aGGGggGCuGGCCAUaccuggaguuGACGGCgaCCCGGGUg -3'
miRNA:   3'- -CUCaaCG-UCGGUG----------UUGUCG--GGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 152031 0.67 0.824882
Target:  5'- --cUUGCuGGCCcCAAUGGCCgCGGGCc -3'
miRNA:   3'- cucAACG-UCGGuGUUGUCGGgGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 142797 0.67 0.824882
Target:  5'- --cUUGCuGGCCcCAAUGGCCgCGGGCc -3'
miRNA:   3'- cucAACG-UCGGuGUUGUCGGgGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 148953 0.67 0.824882
Target:  5'- --cUUGCuGGCCcCAAUGGCCgCGGGCc -3'
miRNA:   3'- cucAACG-UCGGuGUUGUCGGgGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 86469 0.67 0.819741
Target:  5'- uGAGgggGCAGCCugGGCuuugaggggcagcugGGCCUUgagGGGCa -3'
miRNA:   3'- -CUCaa-CGUCGGugUUG---------------UCGGGG---UCCG- -5'
29042 3' -56.7 NC_006146.1 + 46356 0.67 0.816279
Target:  5'- uGAGgaccGCGuCCgACAGCAGCuccCCCAGGCc -3'
miRNA:   3'- -CUCaa--CGUcGG-UGUUGUCG---GGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 128215 0.67 0.816279
Target:  5'- gGGGgcucUGcCAGCCucaGGCAGCCCaccgCGGGCg -3'
miRNA:   3'- -CUCa---AC-GUCGGug-UUGUCGGG----GUCCG- -5'
29042 3' -56.7 NC_006146.1 + 130924 0.67 0.816279
Target:  5'- ------gGGCCGCAGCAGCCUCAGc- -3'
miRNA:   3'- cucaacgUCGGUGUUGUCGGGGUCcg -5'
29042 3' -56.7 NC_006146.1 + 122837 0.67 0.816279
Target:  5'- cGAGUacGUGGaCCGCAcGCuGCCCgGGGCg -3'
miRNA:   3'- -CUCAa-CGUC-GGUGU-UGuCGGGgUCCG- -5'
29042 3' -56.7 NC_006146.1 + 30200 0.67 0.811036
Target:  5'- uGAGgaGCaggAGCCAgAAcCAGCCCCcacuaugguagagaaGGGCa -3'
miRNA:   3'- -CUCaaCG---UCGGUgUU-GUCGGGG---------------UCCG- -5'
29042 3' -56.7 NC_006146.1 + 127515 0.67 0.807509
Target:  5'- cGGGgcagagGCAGCCGCuGCuGCCCCc-GCu -3'
miRNA:   3'- -CUCaa----CGUCGGUGuUGuCGGGGucCG- -5'
29042 3' -56.7 NC_006146.1 + 132625 0.67 0.807509
Target:  5'- aAGaUGUcuGCCACAG-AGCCCUAGGUg -3'
miRNA:   3'- cUCaACGu-CGGUGUUgUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 140699 0.67 0.807509
Target:  5'- ----gGCGGgCGCAGCGGCCCUcuGCu -3'
miRNA:   3'- cucaaCGUCgGUGUUGUCGGGGucCG- -5'
29042 3' -56.7 NC_006146.1 + 53335 0.67 0.807509
Target:  5'- gGAGgcccgGCGGCCGCGggGCGGCgUgAGGUc -3'
miRNA:   3'- -CUCaa---CGUCGGUGU--UGUCGgGgUCCG- -5'
29042 3' -56.7 NC_006146.1 + 146703 0.68 0.798578
Target:  5'- ----gGCgAGCCgGCGAUgacgguggagguGGCCCCGGGCg -3'
miRNA:   3'- cucaaCG-UCGG-UGUUG------------UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 123170 0.68 0.798578
Target:  5'- cGAGga--GGCCccggACGACgAGCUCCGGGCg -3'
miRNA:   3'- -CUCaacgUCGG----UGUUG-UCGGGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.