miRNA display CGI


Results 61 - 80 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 3' -56.7 NC_006146.1 + 46711 0.79 0.224273
Target:  5'- aGAGU--CGGCCGCGGCGGCUCCgAGGCg -3'
miRNA:   3'- -CUCAacGUCGGUGUUGUCGGGG-UCCG- -5'
29042 3' -56.7 NC_006146.1 + 47294 0.69 0.702434
Target:  5'- -cGUccUGCAGCCGgGACuccUCCCGGGCc -3'
miRNA:   3'- cuCA--ACGUCGGUgUUGuc-GGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 48027 0.68 0.789496
Target:  5'- gGAGgcacgGCGGgCCGgcucgggucgucCAGC-GCCCCGGGCa -3'
miRNA:   3'- -CUCaa---CGUC-GGU------------GUUGuCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 48095 0.66 0.886751
Target:  5'- ----gGCGGCCgACAgcGCGGCCUC-GGCc -3'
miRNA:   3'- cucaaCGUCGG-UGU--UGUCGGGGuCCG- -5'
29042 3' -56.7 NC_006146.1 + 48853 0.68 0.780271
Target:  5'- cGGagGCGGgCGCGAagccguCGGCCuCCAGGCg -3'
miRNA:   3'- cUCaaCGUCgGUGUU------GUCGG-GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 50051 0.67 0.824882
Target:  5'- gGAGgcGCAGUC-CAGCAGgccCUCCAGGa -3'
miRNA:   3'- -CUCaaCGUCGGuGUUGUC---GGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 50529 0.67 0.833308
Target:  5'- aGAGgucaGgAGCCGCuccaGGUCCCGGGUg -3'
miRNA:   3'- -CUCaa--CgUCGGUGuug-UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 51282 0.66 0.886751
Target:  5'- -cGUUGUugGGCCAgGACAguaugaacguGCUCCAGGa -3'
miRNA:   3'- cuCAACG--UCGGUgUUGU----------CGGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 51540 0.68 0.780271
Target:  5'- gGAGUcgggGCAGCCGCcguACGugauGaCCCUGGGCg -3'
miRNA:   3'- -CUCAa---CGUCGGUGu--UGU----C-GGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 52461 0.67 0.824882
Target:  5'- -cGUUGUAGCCGCcguGCAGgaCCUcGGCc -3'
miRNA:   3'- cuCAACGUCGGUGu--UGUCg-GGGuCCG- -5'
29042 3' -56.7 NC_006146.1 + 53005 0.67 0.824882
Target:  5'- ----cGUGGCCGCGGgggucgaugacCAGCCUCGGGUg -3'
miRNA:   3'- cucaaCGUCGGUGUU-----------GUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 53335 0.67 0.807509
Target:  5'- gGAGgcccgGCGGCCGCGggGCGGCgUgAGGUc -3'
miRNA:   3'- -CUCaa---CGUCGGUGU--UGUCGgGgUCCG- -5'
29042 3' -56.7 NC_006146.1 + 53735 0.66 0.865099
Target:  5'- ----gGgAGCCGCGGCuGCgCCgGGGCg -3'
miRNA:   3'- cucaaCgUCGGUGUUGuCG-GGgUCCG- -5'
29042 3' -56.7 NC_006146.1 + 54235 0.67 0.824882
Target:  5'- cGGgaGCAGagccuCugGGCGGCCCCggucAGGCg -3'
miRNA:   3'- cUCaaCGUCg----GugUUGUCGGGG----UCCG- -5'
29042 3' -56.7 NC_006146.1 + 55652 0.67 0.847206
Target:  5'- gGGGUgcaGCAGCCGgAGCcaggcggcguugaaGGCCagcaCGGGCa -3'
miRNA:   3'- -CUCAa--CGUCGGUgUUG--------------UCGGg---GUCCG- -5'
29042 3' -56.7 NC_006146.1 + 56518 0.66 0.889487
Target:  5'- gGGGUcGUcgccGGCCAuCAGCAGCUgacgcgucacgcgggCCAGGCc -3'
miRNA:   3'- -CUCAaCG----UCGGU-GUUGUCGG---------------GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 58507 0.7 0.682194
Target:  5'- -----aCAGgCACGGCAGCCCCugcGGCg -3'
miRNA:   3'- cucaacGUCgGUGUUGUCGGGGu--CCG- -5'
29042 3' -56.7 NC_006146.1 + 60876 0.68 0.761429
Target:  5'- ---aUGCAGCCccuGCAGacCGGCCUgGGGCc -3'
miRNA:   3'- cucaACGUCGG---UGUU--GUCGGGgUCCG- -5'
29042 3' -56.7 NC_006146.1 + 62424 0.68 0.761429
Target:  5'- cGGGUggGCuGGCUgaAGCGGCCuCCGGGCu -3'
miRNA:   3'- -CUCAa-CG-UCGGugUUGUCGG-GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 64195 0.67 0.824882
Target:  5'- gGAGUUGCAagguGUCGCGG-AGCUCC-GGCa -3'
miRNA:   3'- -CUCAACGU----CGGUGUUgUCGGGGuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.