miRNA display CGI


Results 81 - 100 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 3' -56.7 NC_006146.1 + 65909 0.71 0.596163
Target:  5'- aGAGUUGagugucuccccagAGCCcccuCGGgAGCCCCAGGCc -3'
miRNA:   3'- -CUCAACg------------UCGGu---GUUgUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 66419 0.66 0.872535
Target:  5'- ---cUGCGGCCuuuuccacucagACAuCAGCCCCAG-Ca -3'
miRNA:   3'- cucaACGUCGG------------UGUuGUCGGGGUCcG- -5'
29042 3' -56.7 NC_006146.1 + 66781 0.67 0.824882
Target:  5'- cGGGgUGCGaCCugGACaccGGgCCCAGGCg -3'
miRNA:   3'- -CUCaACGUcGGugUUG---UCgGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 67994 0.85 0.096158
Target:  5'- uGGGgcGCAGCCACGccacACGGCCCCuGGCg -3'
miRNA:   3'- -CUCaaCGUCGGUGU----UGUCGGGGuCCG- -5'
29042 3' -56.7 NC_006146.1 + 68195 0.73 0.500236
Target:  5'- ----cGCGGgCGCAGCGGCUCCGGGa -3'
miRNA:   3'- cucaaCGUCgGUGUUGUCGGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 68246 0.75 0.398803
Target:  5'- gGAGgcGCGGCUgACAGagacugcCAGCCCCGGGUg -3'
miRNA:   3'- -CUCaaCGUCGG-UGUU-------GUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 69830 0.67 0.833308
Target:  5'- ---gUGCuGCCccacaGCAugAGCCCguGGCc -3'
miRNA:   3'- cucaACGuCGG-----UGUugUCGGGguCCG- -5'
29042 3' -56.7 NC_006146.1 + 72190 0.71 0.621778
Target:  5'- cGAGgacgcgGCGGCCGgaugggcgggagacCAGCGGCCCCacccacugcgcgugaAGGCa -3'
miRNA:   3'- -CUCaa----CGUCGGU--------------GUUGUCGGGG---------------UCCG- -5'
29042 3' -56.7 NC_006146.1 + 73336 0.67 0.8496
Target:  5'- ---gUGCAGauuCGCaAACAGCCCCuucuuuaauAGGCa -3'
miRNA:   3'- cucaACGUCg--GUG-UUGUCGGGG---------UCCG- -5'
29042 3' -56.7 NC_006146.1 + 74625 0.66 0.872535
Target:  5'- ---gUGCAGCCugAuGCGGCgCCCccuguaguAGGCc -3'
miRNA:   3'- cucaACGUCGGugU-UGUCG-GGG--------UCCG- -5'
29042 3' -56.7 NC_006146.1 + 74894 0.69 0.702434
Target:  5'- uAGUUucaGCGGUCGaGAUcccaaGGCCCCAGGCa -3'
miRNA:   3'- cUCAA---CGUCGGUgUUG-----UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 76690 0.66 0.872535
Target:  5'- ---cUGCGGCUACAcCGGCaCCUucGGCg -3'
miRNA:   3'- cucaACGUCGGUGUuGUCG-GGGu-CCG- -5'
29042 3' -56.7 NC_006146.1 + 77282 0.69 0.71247
Target:  5'- -----uCGGCCuccggggaggACAGCAGCCCCAGGa -3'
miRNA:   3'- cucaacGUCGG----------UGUUGUCGGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 78576 0.77 0.318031
Target:  5'- cAGcUGCcccaGGCCgggcccgccccccaGCAGCAGCCCCAGGCc -3'
miRNA:   3'- cUCaACG----UCGG--------------UGUUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 78622 0.74 0.416988
Target:  5'- ----gGCccGCCccccaGCAGCAGCCCCAGGCc -3'
miRNA:   3'- cucaaCGu-CGG-----UGUUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 78677 0.76 0.358402
Target:  5'- ----gGCcgGGCCcgccccccaGCAGCAGCCCCAGGCc -3'
miRNA:   3'- cucaaCG--UCGG---------UGUUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 78737 0.76 0.358402
Target:  5'- ----gGCcgGGCCcgccccccaGCAGCAGCCCCAGGCc -3'
miRNA:   3'- cucaaCG--UCGG---------UGUUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 78772 0.74 0.416988
Target:  5'- ----gGCccGCCccccaGCAGCAGCCCCAGGCc -3'
miRNA:   3'- cucaaCGu-CGG-----UGUUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 78802 0.73 0.490603
Target:  5'- ----gGCccGCCccccaGCAGCAGCCCCAGGCn -3'
miRNA:   3'- cucaaCGu-CGG-----UGUUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 78830 0.8 0.188512
Target:  5'- cGGGccGCcccCCGCAGCAGCCCCAGGCc -3'
miRNA:   3'- -CUCaaCGuc-GGUGUUGUCGGGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.