miRNA display CGI


Results 101 - 120 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 3' -56.7 NC_006146.1 + 78885 0.76 0.358402
Target:  5'- ----gGCcgGGCCcgccccccaGCAGCAGCCCCAGGCc -3'
miRNA:   3'- cucaaCG--UCGG---------UGUUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 79127 0.69 0.702434
Target:  5'- cGGGUgcCAG-CACGGCA-CCCCAGGCa -3'
miRNA:   3'- -CUCAacGUCgGUGUUGUcGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 80980 0.74 0.452982
Target:  5'- --uUUGCAGCCAacGCAGCUCC-GGCg -3'
miRNA:   3'- cucAACGUCGGUguUGUCGGGGuCCG- -5'
29042 3' -56.7 NC_006146.1 + 81974 0.74 0.416988
Target:  5'- uGGGgaGCcucagccucAGCCACAAgAGCCCCAGuGCc -3'
miRNA:   3'- -CUCaaCG---------UCGGUGUUgUCGGGGUC-CG- -5'
29042 3' -56.7 NC_006146.1 + 82031 1.1 0.001919
Target:  5'- gGAGUUGCAGCCACAACAGCCCCAGGCc -3'
miRNA:   3'- -CUCAACGUCGGUGUUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 82092 0.73 0.490603
Target:  5'- cAGgccCAGCCACAACAuGCCCagCAGGCu -3'
miRNA:   3'- cUCaacGUCGGUGUUGU-CGGG--GUCCG- -5'
29042 3' -56.7 NC_006146.1 + 82142 0.68 0.751831
Target:  5'- gGAGUcucagccuCAGCCACAAgAGCCCCu-GCa -3'
miRNA:   3'- -CUCAac------GUCGGUGUUgUCGGGGucCG- -5'
29042 3' -56.7 NC_006146.1 + 82196 0.83 0.128407
Target:  5'- gGAGccGCAGCCACAACAGUCCCAagacccacuGGCu -3'
miRNA:   3'- -CUCaaCGUCGGUGUUGUCGGGGU---------CCG- -5'
29042 3' -56.7 NC_006146.1 + 82304 0.91 0.03945
Target:  5'- gGAGUcGCAGCCACAACAGCCCCAGc- -3'
miRNA:   3'- -CUCAaCGUCGGUGUUGUCGGGGUCcg -5'
29042 3' -56.7 NC_006146.1 + 82365 0.68 0.752796
Target:  5'- cGGaUGCAGCCAuCgcgggcuccacacccGgguuacagggagauACAGCCCCAGGCc -3'
miRNA:   3'- cUCaACGUCGGU-G---------------U--------------UGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 83628 0.7 0.692339
Target:  5'- gGAGUaGUAGCU-CAGCAGCUCCAGa- -3'
miRNA:   3'- -CUCAaCGUCGGuGUUGUCGGGGUCcg -5'
29042 3' -56.7 NC_006146.1 + 84389 0.66 0.886751
Target:  5'- ----gGCGGCCAUcAUGGCCUCcgguAGGCa -3'
miRNA:   3'- cucaaCGUCGGUGuUGUCGGGG----UCCG- -5'
29042 3' -56.7 NC_006146.1 + 84391 0.7 0.641284
Target:  5'- cAGUUGCcccucaAGCC-CAGCuGCCCCucaAGGCc -3'
miRNA:   3'- cUCAACG------UCGGuGUUGuCGGGG---UCCG- -5'
29042 3' -56.7 NC_006146.1 + 84962 0.67 0.824882
Target:  5'- gGGGggGCaaagucccgcaGGCCAUccaGGCCCCAGGg -3'
miRNA:   3'- -CUCaaCG-----------UCGGUGuugUCGGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 86469 0.67 0.819741
Target:  5'- uGAGgggGCAGCCugGGCuuugaggggcagcugGGCCUUgagGGGCa -3'
miRNA:   3'- -CUCaa-CGUCGGugUUG---------------UCGGGG---UCCG- -5'
29042 3' -56.7 NC_006146.1 + 87216 0.67 0.833308
Target:  5'- aGGUgGCGGCCGCAGCcaucaCCUGGGUg -3'
miRNA:   3'- cUCAaCGUCGGUGUUGucg--GGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 91022 0.68 0.780271
Target:  5'- aGAGgcaUGCucaCCACGACAGCUUCAuaGGCg -3'
miRNA:   3'- -CUCa--ACGuc-GGUGUUGUCGGGGU--CCG- -5'
29042 3' -56.7 NC_006146.1 + 92084 0.67 0.833308
Target:  5'- uGGGggGCGGCC----CGGCCUgGGGCu -3'
miRNA:   3'- -CUCaaCGUCGGuguuGUCGGGgUCCG- -5'
29042 3' -56.7 NC_006146.1 + 92700 0.67 0.8496
Target:  5'- gGAGg-GCAGUgACAGCGaCCCCucguGGCg -3'
miRNA:   3'- -CUCaaCGUCGgUGUUGUcGGGGu---CCG- -5'
29042 3' -56.7 NC_006146.1 + 93396 0.67 0.84155
Target:  5'- uGGUUGCcgaagcagauGGCgACcuuguucaggGACAGCCCCuGGGCc -3'
miRNA:   3'- cUCAACG----------UCGgUG----------UUGUCGGGG-UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.