Results 121 - 140 of 217 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29042 | 3' | -56.7 | NC_006146.1 | + | 94022 | 0.68 | 0.770912 |
Target: 5'- ---gUGCGGCCcgGCAggggcACGGCCCCGaGCg -3' miRNA: 3'- cucaACGUCGG--UGU-----UGUCGGGGUcCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 94784 | 0.67 | 0.824882 |
Target: 5'- cAGUUGCgGGCCACGuccacguaggcCAGgCCCGGGg -3' miRNA: 3'- cUCAACG-UCGGUGUu----------GUCgGGGUCCg -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 95349 | 0.7 | 0.660763 |
Target: 5'- ----cGCGGCCACggUuguGGCCCCcguuaccAGGCa -3' miRNA: 3'- cucaaCGUCGGUGuuG---UCGGGG-------UCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 98816 | 0.66 | 0.886751 |
Target: 5'- ---gUGCAGCCACAaaugucaccGCuguuGCCuaCCAGGUc -3' miRNA: 3'- cucaACGUCGGUGU---------UGu---CGG--GGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 99610 | 0.66 | 0.872535 |
Target: 5'- gGAGga--AGCaCACAACuGCCCaCGGGUg -3' miRNA: 3'- -CUCaacgUCG-GUGUUGuCGGG-GUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 99677 | 0.76 | 0.33512 |
Target: 5'- gGAGUUGacCAGCCAgGACucgaAGCCCCcGGCg -3' miRNA: 3'- -CUCAAC--GUCGGUgUUG----UCGGGGuCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 101582 | 0.69 | 0.742126 |
Target: 5'- gGAGUUGgAGCCaACGACgAGgCCCAGa- -3' miRNA: 3'- -CUCAACgUCGG-UGUUG-UCgGGGUCcg -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 102851 | 0.74 | 0.438378 |
Target: 5'- -uGUUgGCAGCCAgGGCAGCCgccaccuggucguggCCGGGCc -3' miRNA: 3'- cuCAA-CGUCGGUgUUGUCGG---------------GGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 103759 | 0.66 | 0.879754 |
Target: 5'- cAGgaGCGGCCA--GCGGCUCCcGGUc -3' miRNA: 3'- cUCaaCGUCGGUguUGUCGGGGuCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 106593 | 0.8 | 0.208288 |
Target: 5'- ---cUGCcGCCAguACGGCCCCAGGCc -3' miRNA: 3'- cucaACGuCGGUguUGUCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 110199 | 0.68 | 0.780271 |
Target: 5'- gGAGaUGCGGCCccauGCAGuuGCCCgugaGGGCa -3' miRNA: 3'- -CUCaACGUCGG----UGUUguCGGGg---UCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 113333 | 0.68 | 0.770912 |
Target: 5'- gGGGUUGaAGCCGaagcugauCAGCCCCAGuaGCg -3' miRNA: 3'- -CUCAACgUCGGUguu-----GUCGGGGUC--CG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 114038 | 0.69 | 0.732325 |
Target: 5'- ----gGCGGCCGC--CAGCCCCAGcCa -3' miRNA: 3'- cucaaCGUCGGUGuuGUCGGGGUCcG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 114212 | 0.67 | 0.8496 |
Target: 5'- aGGUUGUccAGCagggcCAGCCCCAGGg -3' miRNA: 3'- cUCAACG--UCGguguuGUCGGGGUCCg -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 114590 | 0.68 | 0.789496 |
Target: 5'- -cGgcGCAGCUACGGCcugGGCCaCCucgAGGCg -3' miRNA: 3'- cuCaaCGUCGGUGUUG---UCGG-GG---UCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 115519 | 0.67 | 0.833308 |
Target: 5'- ---aUGCuGGCCuc-GguGCCCCGGGCg -3' miRNA: 3'- cucaACG-UCGGuguUguCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 115945 | 0.72 | 0.559597 |
Target: 5'- cGGUaGCGGCgGCGGCGgucGCCCCgcGGGCa -3' miRNA: 3'- cUCAaCGUCGgUGUUGU---CGGGG--UCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 117205 | 0.67 | 0.833308 |
Target: 5'- aGAGgugGCAGUCuCAaacuGCuGcCCCCGGGCu -3' miRNA: 3'- -CUCaa-CGUCGGuGU----UGuC-GGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 117875 | 0.7 | 0.651543 |
Target: 5'- cGGcgGCGGCCGCGGCcagccgcgugaGGCCCaGGGCc -3' miRNA: 3'- cUCaaCGUCGGUGUUG-----------UCGGGgUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 118063 | 0.7 | 0.692339 |
Target: 5'- cGGggGCGGCgGCGGCucGGCCCUccgcauccuGGGCa -3' miRNA: 3'- cUCaaCGUCGgUGUUG--UCGGGG---------UCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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