miRNA display CGI


Results 61 - 80 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 3' -56.7 NC_006146.1 + 130511 0.66 0.872535
Target:  5'- aGGUcuagGguGCUGuCAGCAGCCacaauCCGGGCa -3'
miRNA:   3'- cUCAa---CguCGGU-GUUGUCGG-----GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 130477 0.7 0.672007
Target:  5'- ----cGgGGCCGCuGCcGCCCCGGGUg -3'
miRNA:   3'- cucaaCgUCGGUGuUGuCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 129542 0.66 0.865099
Target:  5'- aGAGccaCGGCCACcACcgccaGGCCCUGGGCc -3'
miRNA:   3'- -CUCaacGUCGGUGuUG-----UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 129348 0.66 0.857452
Target:  5'- -cGgaGCGGCCGguucucgAGCAGCCUCAGGa -3'
miRNA:   3'- cuCaaCGUCGGUg------UUGUCGGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 128531 0.66 0.872535
Target:  5'- -cGUUGCGGCuCACGACcGCCacgaagacguCCcGGCu -3'
miRNA:   3'- cuCAACGUCG-GUGUUGuCGG----------GGuCCG- -5'
29042 3' -56.7 NC_006146.1 + 128274 0.74 0.443824
Target:  5'- uGAGgcccaCGGCgGCGGCcgAGCCCCAGGCu -3'
miRNA:   3'- -CUCaac--GUCGgUGUUG--UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 128215 0.67 0.816279
Target:  5'- gGGGgcucUGcCAGCCucaGGCAGCCCaccgCGGGCg -3'
miRNA:   3'- -CUCa---AC-GUCGGug-UUGUCGGG----GUCCG- -5'
29042 3' -56.7 NC_006146.1 + 128186 0.69 0.742126
Target:  5'- cGGGagGCGGCC-CAggggggcgccGCGGCgCCGGGCc -3'
miRNA:   3'- -CUCaaCGUCGGuGU----------UGUCGgGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 127515 0.67 0.807509
Target:  5'- cGGGgcagagGCAGCCGCuGCuGCCCCc-GCu -3'
miRNA:   3'- -CUCaa----CGUCGGUGuUGuCGGGGucCG- -5'
29042 3' -56.7 NC_006146.1 + 127443 0.74 0.416988
Target:  5'- cGAGgagGCuGCCGCuccagauguGGCGGCCCgCAGGCu -3'
miRNA:   3'- -CUCaa-CGuCGGUG---------UUGUCGGG-GUCCG- -5'
29042 3' -56.7 NC_006146.1 + 125358 0.68 0.751831
Target:  5'- gGAGgccaggGCGGCCAagcccaAGgAGgCCCAGGCc -3'
miRNA:   3'- -CUCaa----CGUCGGUg-----UUgUCgGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 123499 0.71 0.57985
Target:  5'- uGAGgcugGCccuGGCCACGGuCGaCCCCAGGCg -3'
miRNA:   3'- -CUCaa--CG---UCGGUGUU-GUcGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 123264 0.71 0.631017
Target:  5'- cGGGccGCGGCCAgaGACGGCUCguGGCc -3'
miRNA:   3'- -CUCaaCGUCGGUg-UUGUCGGGguCCG- -5'
29042 3' -56.7 NC_006146.1 + 123170 0.68 0.798578
Target:  5'- cGAGga--GGCCccggACGACgAGCUCCGGGCg -3'
miRNA:   3'- -CUCaacgUCGG----UGUUG-UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 122837 0.67 0.816279
Target:  5'- cGAGUacGUGGaCCGCAcGCuGCCCgGGGCg -3'
miRNA:   3'- -CUCAa-CGUC-GGUGU-UGuCGGGgUCCG- -5'
29042 3' -56.7 NC_006146.1 + 121156 0.69 0.702434
Target:  5'- cGAGcUGCucuaCCugGGCAccGCCCUAGGCg -3'
miRNA:   3'- -CUCaACGuc--GGugUUGU--CGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 120006 0.69 0.702434
Target:  5'- gGAGgcccaGGCCGCAcccGCGGCCaguCCGGGCa -3'
miRNA:   3'- -CUCaacg-UCGGUGU---UGUCGG---GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 118063 0.7 0.692339
Target:  5'- cGGggGCGGCgGCGGCucGGCCCUccgcauccuGGGCa -3'
miRNA:   3'- cUCaaCGUCGgUGUUG--UCGGGG---------UCCG- -5'
29042 3' -56.7 NC_006146.1 + 117875 0.7 0.651543
Target:  5'- cGGcgGCGGCCGCGGCcagccgcgugaGGCCCaGGGCc -3'
miRNA:   3'- cUCaaCGUCGGUGUUG-----------UCGGGgUCCG- -5'
29042 3' -56.7 NC_006146.1 + 117205 0.67 0.833308
Target:  5'- aGAGgugGCAGUCuCAaacuGCuGcCCCCGGGCu -3'
miRNA:   3'- -CUCaa-CGUCGGuGU----UGuC-GGGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.