miRNA display CGI


Results 81 - 100 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 3' -56.7 NC_006146.1 + 115945 0.72 0.559597
Target:  5'- cGGUaGCGGCgGCGGCGgucGCCCCgcGGGCa -3'
miRNA:   3'- cUCAaCGUCGgUGUUGU---CGGGG--UCCG- -5'
29042 3' -56.7 NC_006146.1 + 115519 0.67 0.833308
Target:  5'- ---aUGCuGGCCuc-GguGCCCCGGGCg -3'
miRNA:   3'- cucaACG-UCGGuguUguCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 114590 0.68 0.789496
Target:  5'- -cGgcGCAGCUACGGCcugGGCCaCCucgAGGCg -3'
miRNA:   3'- cuCaaCGUCGGUGUUG---UCGG-GG---UCCG- -5'
29042 3' -56.7 NC_006146.1 + 114212 0.67 0.8496
Target:  5'- aGGUUGUccAGCagggcCAGCCCCAGGg -3'
miRNA:   3'- cUCAACG--UCGguguuGUCGGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 114038 0.69 0.732325
Target:  5'- ----gGCGGCCGC--CAGCCCCAGcCa -3'
miRNA:   3'- cucaaCGUCGGUGuuGUCGGGGUCcG- -5'
29042 3' -56.7 NC_006146.1 + 113333 0.68 0.770912
Target:  5'- gGGGUUGaAGCCGaagcugauCAGCCCCAGuaGCg -3'
miRNA:   3'- -CUCAACgUCGGUguu-----GUCGGGGUC--CG- -5'
29042 3' -56.7 NC_006146.1 + 110199 0.68 0.780271
Target:  5'- gGAGaUGCGGCCccauGCAGuuGCCCgugaGGGCa -3'
miRNA:   3'- -CUCaACGUCGG----UGUUguCGGGg---UCCG- -5'
29042 3' -56.7 NC_006146.1 + 106593 0.8 0.208288
Target:  5'- ---cUGCcGCCAguACGGCCCCAGGCc -3'
miRNA:   3'- cucaACGuCGGUguUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 103759 0.66 0.879754
Target:  5'- cAGgaGCGGCCA--GCGGCUCCcGGUc -3'
miRNA:   3'- cUCaaCGUCGGUguUGUCGGGGuCCG- -5'
29042 3' -56.7 NC_006146.1 + 102851 0.74 0.438378
Target:  5'- -uGUUgGCAGCCAgGGCAGCCgccaccuggucguggCCGGGCc -3'
miRNA:   3'- cuCAA-CGUCGGUgUUGUCGG---------------GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 101582 0.69 0.742126
Target:  5'- gGAGUUGgAGCCaACGACgAGgCCCAGa- -3'
miRNA:   3'- -CUCAACgUCGG-UGUUG-UCgGGGUCcg -5'
29042 3' -56.7 NC_006146.1 + 99677 0.76 0.33512
Target:  5'- gGAGUUGacCAGCCAgGACucgaAGCCCCcGGCg -3'
miRNA:   3'- -CUCAAC--GUCGGUgUUG----UCGGGGuCCG- -5'
29042 3' -56.7 NC_006146.1 + 99610 0.66 0.872535
Target:  5'- gGAGga--AGCaCACAACuGCCCaCGGGUg -3'
miRNA:   3'- -CUCaacgUCG-GUGUUGuCGGG-GUCCG- -5'
29042 3' -56.7 NC_006146.1 + 98816 0.66 0.886751
Target:  5'- ---gUGCAGCCACAaaugucaccGCuguuGCCuaCCAGGUc -3'
miRNA:   3'- cucaACGUCGGUGU---------UGu---CGG--GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 95349 0.7 0.660763
Target:  5'- ----cGCGGCCACggUuguGGCCCCcguuaccAGGCa -3'
miRNA:   3'- cucaaCGUCGGUGuuG---UCGGGG-------UCCG- -5'
29042 3' -56.7 NC_006146.1 + 94784 0.67 0.824882
Target:  5'- cAGUUGCgGGCCACGuccacguaggcCAGgCCCGGGg -3'
miRNA:   3'- cUCAACG-UCGGUGUu----------GUCgGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 94022 0.68 0.770912
Target:  5'- ---gUGCGGCCcgGCAggggcACGGCCCCGaGCg -3'
miRNA:   3'- cucaACGUCGG--UGU-----UGUCGGGGUcCG- -5'
29042 3' -56.7 NC_006146.1 + 93396 0.67 0.84155
Target:  5'- uGGUUGCcgaagcagauGGCgACcuuguucaggGACAGCCCCuGGGCc -3'
miRNA:   3'- cUCAACG----------UCGgUG----------UUGUCGGGG-UCCG- -5'
29042 3' -56.7 NC_006146.1 + 92700 0.67 0.8496
Target:  5'- gGAGg-GCAGUgACAGCGaCCCCucguGGCg -3'
miRNA:   3'- -CUCaaCGUCGgUGUUGUcGGGGu---CCG- -5'
29042 3' -56.7 NC_006146.1 + 92084 0.67 0.833308
Target:  5'- uGGGggGCGGCC----CGGCCUgGGGCu -3'
miRNA:   3'- -CUCaaCGUCGGuguuGUCGGGgUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.