Results 101 - 120 of 217 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29042 | 3' | -56.7 | NC_006146.1 | + | 91022 | 0.68 | 0.780271 |
Target: 5'- aGAGgcaUGCucaCCACGACAGCUUCAuaGGCg -3' miRNA: 3'- -CUCa--ACGuc-GGUGUUGUCGGGGU--CCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 87216 | 0.67 | 0.833308 |
Target: 5'- aGGUgGCGGCCGCAGCcaucaCCUGGGUg -3' miRNA: 3'- cUCAaCGUCGGUGUUGucg--GGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 86469 | 0.67 | 0.819741 |
Target: 5'- uGAGgggGCAGCCugGGCuuugaggggcagcugGGCCUUgagGGGCa -3' miRNA: 3'- -CUCaa-CGUCGGugUUG---------------UCGGGG---UCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 84962 | 0.67 | 0.824882 |
Target: 5'- gGGGggGCaaagucccgcaGGCCAUccaGGCCCCAGGg -3' miRNA: 3'- -CUCaaCG-----------UCGGUGuugUCGGGGUCCg -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 84391 | 0.7 | 0.641284 |
Target: 5'- cAGUUGCcccucaAGCC-CAGCuGCCCCucaAGGCc -3' miRNA: 3'- cUCAACG------UCGGuGUUGuCGGGG---UCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 84389 | 0.66 | 0.886751 |
Target: 5'- ----gGCGGCCAUcAUGGCCUCcgguAGGCa -3' miRNA: 3'- cucaaCGUCGGUGuUGUCGGGG----UCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 83628 | 0.7 | 0.692339 |
Target: 5'- gGAGUaGUAGCU-CAGCAGCUCCAGa- -3' miRNA: 3'- -CUCAaCGUCGGuGUUGUCGGGGUCcg -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 82365 | 0.68 | 0.752796 |
Target: 5'- cGGaUGCAGCCAuCgcgggcuccacacccGgguuacagggagauACAGCCCCAGGCc -3' miRNA: 3'- cUCaACGUCGGU-G---------------U--------------UGUCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 82304 | 0.91 | 0.03945 |
Target: 5'- gGAGUcGCAGCCACAACAGCCCCAGc- -3' miRNA: 3'- -CUCAaCGUCGGUGUUGUCGGGGUCcg -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 82196 | 0.83 | 0.128407 |
Target: 5'- gGAGccGCAGCCACAACAGUCCCAagacccacuGGCu -3' miRNA: 3'- -CUCaaCGUCGGUGUUGUCGGGGU---------CCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 82142 | 0.68 | 0.751831 |
Target: 5'- gGAGUcucagccuCAGCCACAAgAGCCCCu-GCa -3' miRNA: 3'- -CUCAac------GUCGGUGUUgUCGGGGucCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 82092 | 0.73 | 0.490603 |
Target: 5'- cAGgccCAGCCACAACAuGCCCagCAGGCu -3' miRNA: 3'- cUCaacGUCGGUGUUGU-CGGG--GUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 82031 | 1.1 | 0.001919 |
Target: 5'- gGAGUUGCAGCCACAACAGCCCCAGGCc -3' miRNA: 3'- -CUCAACGUCGGUGUUGUCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 81974 | 0.74 | 0.416988 |
Target: 5'- uGGGgaGCcucagccucAGCCACAAgAGCCCCAGuGCc -3' miRNA: 3'- -CUCaaCG---------UCGGUGUUgUCGGGGUC-CG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 80980 | 0.74 | 0.452982 |
Target: 5'- --uUUGCAGCCAacGCAGCUCC-GGCg -3' miRNA: 3'- cucAACGUCGGUguUGUCGGGGuCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 79127 | 0.69 | 0.702434 |
Target: 5'- cGGGUgcCAG-CACGGCA-CCCCAGGCa -3' miRNA: 3'- -CUCAacGUCgGUGUUGUcGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 78885 | 0.76 | 0.358402 |
Target: 5'- ----gGCcgGGCCcgccccccaGCAGCAGCCCCAGGCc -3' miRNA: 3'- cucaaCG--UCGG---------UGUUGUCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 78830 | 0.8 | 0.188512 |
Target: 5'- cGGGccGCcccCCGCAGCAGCCCCAGGCc -3' miRNA: 3'- -CUCaaCGuc-GGUGUUGUCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 78802 | 0.73 | 0.490603 |
Target: 5'- ----gGCccGCCccccaGCAGCAGCCCCAGGCn -3' miRNA: 3'- cucaaCGu-CGG-----UGUUGUCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 78772 | 0.74 | 0.416988 |
Target: 5'- ----gGCccGCCccccaGCAGCAGCCCCAGGCc -3' miRNA: 3'- cucaaCGu-CGG-----UGUUGUCGGGGUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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