miRNA display CGI


Results 61 - 80 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 3' -56.7 NC_006146.1 + 25383 0.7 0.640257
Target:  5'- ----gGCGGCCGCccucagucccccaGACAGaCCCCAGGg -3'
miRNA:   3'- cucaaCGUCGGUG-------------UUGUC-GGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 120006 0.69 0.702434
Target:  5'- gGAGgcccaGGCCGCAcccGCGGCCaguCCGGGCa -3'
miRNA:   3'- -CUCaacg-UCGGUGU---UGUCGG---GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 106593 0.8 0.208288
Target:  5'- ---cUGCcGCCAguACGGCCCCAGGCc -3'
miRNA:   3'- cucaACGuCGGUguUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 156356 0.77 0.320222
Target:  5'- ----aGCGGCC-CAGCAGCUCCAGGg -3'
miRNA:   3'- cucaaCGUCGGuGUUGUCGGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 78885 0.76 0.358402
Target:  5'- ----gGCcgGGCCcgccccccaGCAGCAGCCCCAGGCc -3'
miRNA:   3'- cucaaCG--UCGG---------UGUUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 21324 0.76 0.358402
Target:  5'- aAGgcGCAGgCACAACAGCCCaaccGGCg -3'
miRNA:   3'- cUCaaCGUCgGUGUUGUCGGGgu--CCG- -5'
29042 3' -56.7 NC_006146.1 + 81974 0.74 0.416988
Target:  5'- uGGGgaGCcucagccucAGCCACAAgAGCCCCAGuGCc -3'
miRNA:   3'- -CUCaaCG---------UCGGUGUUgUCGGGGUC-CG- -5'
29042 3' -56.7 NC_006146.1 + 82092 0.73 0.490603
Target:  5'- cAGgccCAGCCACAACAuGCCCagCAGGCu -3'
miRNA:   3'- cUCaacGUCGGUGUUGU-CGGG--GUCCG- -5'
29042 3' -56.7 NC_006146.1 + 155482 0.73 0.509952
Target:  5'- ---cUGCAGCCGgGcCAGCCCCucugAGGCc -3'
miRNA:   3'- cucaACGUCGGUgUuGUCGGGG----UCCG- -5'
29042 3' -56.7 NC_006146.1 + 34094 0.71 0.600253
Target:  5'- cGGGggGCAGCCGCGACccagcgcGCCCCguucacGGGg -3'
miRNA:   3'- -CUCaaCGUCGGUGUUGu------CGGGG------UCCg -5'
29042 3' -56.7 NC_006146.1 + 52461 0.67 0.824882
Target:  5'- -cGUUGUAGCCGCcguGCAGgaCCUcGGCc -3'
miRNA:   3'- cuCAACGUCGGUGu--UGUCg-GGGuCCG- -5'
29042 3' -56.7 NC_006146.1 + 94784 0.67 0.824882
Target:  5'- cAGUUGCgGGCCACGuccacguaggcCAGgCCCGGGg -3'
miRNA:   3'- cUCAACG-UCGGUGUu----------GUCgGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 4964 0.69 0.722436
Target:  5'- ----aGgGGCCACGAgAGCCuCCuGGCg -3'
miRNA:   3'- cucaaCgUCGGUGUUgUCGG-GGuCCG- -5'
29042 3' -56.7 NC_006146.1 + 23121 0.69 0.722436
Target:  5'- ----cGCAGCCGCccagucuCuGCCuCCAGGCa -3'
miRNA:   3'- cucaaCGUCGGUGuu-----GuCGG-GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 39994 0.68 0.74893
Target:  5'- uGAGUggGUGGCC-CGGCAGCCUUugaccggucagacgGGGCa -3'
miRNA:   3'- -CUCAa-CGUCGGuGUUGUCGGGG--------------UCCG- -5'
29042 3' -56.7 NC_006146.1 + 156050 0.68 0.751831
Target:  5'- uGGcUGCccccucGGCCucCcGCGGCCCCGGGCc -3'
miRNA:   3'- cUCaACG------UCGGu-GuUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 60876 0.68 0.761429
Target:  5'- ---aUGCAGCCccuGCAGacCGGCCUgGGGCc -3'
miRNA:   3'- cucaACGUCGG---UGUU--GUCGGGgUCCG- -5'
29042 3' -56.7 NC_006146.1 + 110199 0.68 0.780271
Target:  5'- gGAGaUGCGGCCccauGCAGuuGCCCgugaGGGCa -3'
miRNA:   3'- -CUCaACGUCGG----UGUUguCGGGg---UCCG- -5'
29042 3' -56.7 NC_006146.1 + 147465 0.68 0.789496
Target:  5'- cGAGacggGCAGCCGgAGCuugugguacuGCCCCuccGGCa -3'
miRNA:   3'- -CUCaa--CGUCGGUgUUGu---------CGGGGu--CCG- -5'
29042 3' -56.7 NC_006146.1 + 130924 0.67 0.816279
Target:  5'- ------gGGCCGCAGCAGCCUCAGc- -3'
miRNA:   3'- cucaacgUCGGUGUUGUCGGGGUCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.