Results 81 - 100 of 217 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29042 | 3' | -56.7 | NC_006146.1 | + | 20043 | 0.69 | 0.722436 |
Target: 5'- ----cGCAGCCGCccagucuCuGCCuCCAGGCa -3' miRNA: 3'- cucaaCGUCGGUGuu-----GuCGG-GGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 128186 | 0.69 | 0.742126 |
Target: 5'- cGGGagGCGGCC-CAggggggcgccGCGGCgCCGGGCc -3' miRNA: 3'- -CUCaaCGUCGGuGU----------UGUCGgGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 4366 | 0.68 | 0.751831 |
Target: 5'- ----cGUGGCCACGgccccGCGGgcuCCCCAGGCc -3' miRNA: 3'- cucaaCGUCGGUGU-----UGUC---GGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 82365 | 0.68 | 0.752796 |
Target: 5'- cGGaUGCAGCCAuCgcgggcuccacacccGgguuacagggagauACAGCCCCAGGCc -3' miRNA: 3'- cUCaACGUCGGU-G---------------U--------------UGUCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 94022 | 0.68 | 0.770912 |
Target: 5'- ---gUGCGGCCcgGCAggggcACGGCCCCGaGCg -3' miRNA: 3'- cucaACGUCGG--UGU-----UGUCGGGGUcCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 147465 | 0.68 | 0.789496 |
Target: 5'- cGAGacggGCAGCCGgAGCuugugguacuGCCCCuccGGCa -3' miRNA: 3'- -CUCaa--CGUCGGUgUUGu---------CGGGGu--CCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 130924 | 0.67 | 0.816279 |
Target: 5'- ------gGGCCGCAGCAGCCUCAGc- -3' miRNA: 3'- cucaacgUCGGUGUUGUCGGGGUCcg -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 34094 | 0.71 | 0.600253 |
Target: 5'- cGGGggGCAGCCGCGACccagcgcGCCCCguucacGGGg -3' miRNA: 3'- -CUCaaCGUCGGUGUUGu------CGGGG------UCCg -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 155482 | 0.73 | 0.509952 |
Target: 5'- ---cUGCAGCCGgGcCAGCCCCucugAGGCc -3' miRNA: 3'- cucaACGUCGGUgUuGUCGGGG----UCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 82092 | 0.73 | 0.490603 |
Target: 5'- cAGgccCAGCCACAACAuGCCCagCAGGCu -3' miRNA: 3'- cUCaacGUCGGUGUUGU-CGGG--GUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 69830 | 0.67 | 0.833308 |
Target: 5'- ---gUGCuGCCccacaGCAugAGCCCguGGCc -3' miRNA: 3'- cucaACGuCGG-----UGUugUCGGGguCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 163683 | 0.67 | 0.8496 |
Target: 5'- uAGUugUGCAGgCGCGugGGCCUUggugGGGCc -3' miRNA: 3'- cUCA--ACGUCgGUGUugUCGGGG----UCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 154245 | 0.67 | 0.8496 |
Target: 5'- -cGUUaGCcaGGCCGCugGugGGCCUCAGGUu -3' miRNA: 3'- cuCAA-CG--UCGGUG--UugUCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 33125 | 0.67 | 0.8496 |
Target: 5'- cGGGUUcGCcgGGCCGCuGCcccGCUCCGGGUg -3' miRNA: 3'- -CUCAA-CG--UCGGUGuUGu--CGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 17463 | 0.66 | 0.857452 |
Target: 5'- ---cUGUcuagGGCCGggagaGGCAGCCCCgAGGCg -3' miRNA: 3'- cucaACG----UCGGUg----UUGUCGGGG-UCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 106593 | 0.8 | 0.208288 |
Target: 5'- ---cUGCcGCCAguACGGCCCCAGGCc -3' miRNA: 3'- cucaACGuCGGUguUGUCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 156356 | 0.77 | 0.320222 |
Target: 5'- ----aGCGGCC-CAGCAGCUCCAGGg -3' miRNA: 3'- cucaaCGUCGGuGUUGUCGGGGUCCg -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 78885 | 0.76 | 0.358402 |
Target: 5'- ----gGCcgGGCCcgccccccaGCAGCAGCCCCAGGCc -3' miRNA: 3'- cucaaCG--UCGG---------UGUUGUCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 21324 | 0.76 | 0.358402 |
Target: 5'- aAGgcGCAGgCACAACAGCCCaaccGGCg -3' miRNA: 3'- cUCaaCGUCgGUGUUGUCGGGgu--CCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 81974 | 0.74 | 0.416988 |
Target: 5'- uGGGgaGCcucagccucAGCCACAAgAGCCCCAGuGCc -3' miRNA: 3'- -CUCaaCG---------UCGGUGUUgUCGGGGUC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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