miRNA display CGI


Results 101 - 120 of 217 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 3' -56.7 NC_006146.1 + 38810 0.66 0.871801
Target:  5'- gGGGUgcacaucUGCAGCCA-GGCccugAGCCUgGGGCa -3'
miRNA:   3'- -CUCA-------ACGUCGGUgUUG----UCGGGgUCCG- -5'
29042 3' -56.7 NC_006146.1 + 157494 0.66 0.879754
Target:  5'- cGGGccUUGCAGaCCugGcugagGCAGUCCguGGCc -3'
miRNA:   3'- -CUC--AACGUC-GGugU-----UGUCGGGguCCG- -5'
29042 3' -56.7 NC_006146.1 + 52461 0.67 0.824882
Target:  5'- -cGUUGUAGCCGCcguGCAGgaCCUcGGCc -3'
miRNA:   3'- cuCAACGUCGGUGu--UGUCg-GGGuCCG- -5'
29042 3' -56.7 NC_006146.1 + 54235 0.67 0.824882
Target:  5'- cGGgaGCAGagccuCugGGCGGCCCCggucAGGCg -3'
miRNA:   3'- cUCaaCGUCg----GugUUGUCGGGG----UCCG- -5'
29042 3' -56.7 NC_006146.1 + 117205 0.67 0.833308
Target:  5'- aGAGgugGCAGUCuCAaacuGCuGcCCCCGGGCu -3'
miRNA:   3'- -CUCaa-CGUCGGuGU----UGuC-GGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 16149 0.7 0.640257
Target:  5'- ----gGCGGCCGCccucagucccccaGACAGaCCCCAGGg -3'
miRNA:   3'- cucaaCGUCGGUG-------------UUGUC-GGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 25383 0.7 0.640257
Target:  5'- ----gGCGGCCGCccucagucccccaGACAGaCCCCAGGg -3'
miRNA:   3'- cucaaCGUCGGUG-------------UUGUC-GGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 120006 0.69 0.702434
Target:  5'- gGAGgcccaGGCCGCAcccGCGGCCaguCCGGGCa -3'
miRNA:   3'- -CUCaacg-UCGGUGU---UGUCGG---GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 79127 0.69 0.702434
Target:  5'- cGGGUgcCAG-CACGGCA-CCCCAGGCa -3'
miRNA:   3'- -CUCAacGUCgGUGUUGUcGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 23121 0.69 0.722436
Target:  5'- ----cGCAGCCGCccagucuCuGCCuCCAGGCa -3'
miRNA:   3'- cucaaCGUCGGUGuu-----GuCGG-GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 101582 0.69 0.742126
Target:  5'- gGAGUUGgAGCCaACGACgAGgCCCAGa- -3'
miRNA:   3'- -CUCAACgUCGG-UGUUG-UCgGGGUCcg -5'
29042 3' -56.7 NC_006146.1 + 156050 0.68 0.751831
Target:  5'- uGGcUGCccccucGGCCucCcGCGGCCCCGGGCc -3'
miRNA:   3'- cUCaACG------UCGGu-GuUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 44188 0.68 0.761429
Target:  5'- aGAGgcacgcGCGGCUGCAcuGCAGCCggGGGCg -3'
miRNA:   3'- -CUCaa----CGUCGGUGU--UGUCGGggUCCG- -5'
29042 3' -56.7 NC_006146.1 + 110199 0.68 0.780271
Target:  5'- gGAGaUGCGGCCccauGCAGuuGCCCgugaGGGCa -3'
miRNA:   3'- -CUCaACGUCGG----UGUUguCGGGg---UCCG- -5'
29042 3' -56.7 NC_006146.1 + 139205 0.68 0.783977
Target:  5'- cGGUgGCAGCCGCggUcccccacccuucccuGGUCCCuGGGCu -3'
miRNA:   3'- cUCAaCGUCGGUGuuG---------------UCGGGG-UCCG- -5'
29042 3' -56.7 NC_006146.1 + 130924 0.67 0.816279
Target:  5'- ------gGGCCGCAGCAGCCUCAGc- -3'
miRNA:   3'- cucaacgUCGGUGUUGUCGGGGUCcg -5'
29042 3' -56.7 NC_006146.1 + 87216 0.67 0.833308
Target:  5'- aGGUgGCGGCCGCAGCcaucaCCUGGGUg -3'
miRNA:   3'- cUCAaCGUCGGUGUUGucg--GGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 125358 0.68 0.751831
Target:  5'- gGAGgccaggGCGGCCAagcccaAGgAGgCCCAGGCc -3'
miRNA:   3'- -CUCaa----CGUCGGUg-----UUgUCgGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 114038 0.69 0.732325
Target:  5'- ----gGCGGCCGC--CAGCCCCAGcCa -3'
miRNA:   3'- cucaaCGUCGGUGuuGUCGGGGUCcG- -5'
29042 3' -56.7 NC_006146.1 + 140137 0.68 0.761429
Target:  5'- gGAGgUGguGgCGgGGguGCCCCGGGUa -3'
miRNA:   3'- -CUCaACguCgGUgUUguCGGGGUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.