miRNA display CGI


Results 121 - 140 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 3' -56.7 NC_006146.1 + 114038 0.69 0.732325
Target:  5'- ----gGCGGCCGC--CAGCCCCAGcCa -3'
miRNA:   3'- cucaaCGUCGGUGuuGUCGGGGUCcG- -5'
29042 3' -56.7 NC_006146.1 + 76690 0.66 0.872535
Target:  5'- ---cUGCGGCUACAcCGGCaCCUucGGCg -3'
miRNA:   3'- cucaACGUCGGUGUuGUCG-GGGu-CCG- -5'
29042 3' -56.7 NC_006146.1 + 92084 0.67 0.833308
Target:  5'- uGGGggGCGGCC----CGGCCUgGGGCu -3'
miRNA:   3'- -CUCaaCGUCGGuguuGUCGGGgUCCG- -5'
29042 3' -56.7 NC_006146.1 + 137486 0.76 0.342756
Target:  5'- cGAGcgGCGG-CGCAGCGGUgCCCAGGCg -3'
miRNA:   3'- -CUCaaCGUCgGUGUUGUCG-GGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 142651 0.66 0.872535
Target:  5'- ---cUGCccAGCCACc-CAGCcucgCCCAGGCg -3'
miRNA:   3'- cucaACG--UCGGUGuuGUCG----GGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 31652 0.68 0.770912
Target:  5'- ----aGCAGUCACAaacACA-CCUCAGGCa -3'
miRNA:   3'- cucaaCGUCGGUGU---UGUcGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 91022 0.68 0.780271
Target:  5'- aGAGgcaUGCucaCCACGACAGCUUCAuaGGCg -3'
miRNA:   3'- -CUCa--ACGuc-GGUGUUGUCGGGGU--CCG- -5'
29042 3' -56.7 NC_006146.1 + 68246 0.75 0.398803
Target:  5'- gGAGgcGCGGCUgACAGagacugcCAGCCCCGGGUg -3'
miRNA:   3'- -CUCaaCGUCGG-UGUU-------GUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 87216 0.67 0.833308
Target:  5'- aGGUgGCGGCCGCAGCcaucaCCUGGGUg -3'
miRNA:   3'- cUCAaCGUCGGUGUUGucg--GGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 143624 0.67 0.833308
Target:  5'- -uGgcGgAGCCgGCGAUgacgguggagguGGCCCCGGGCg -3'
miRNA:   3'- cuCaaCgUCGG-UGUUG------------UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 149779 0.67 0.833308
Target:  5'- -uGgcGgAGCCgGCGAUgacgguggagguGGCCCCGGGCg -3'
miRNA:   3'- cuCaaCgUCGG-UGUUG------------UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 152857 0.67 0.833308
Target:  5'- -uGgcGgAGCCgGCGAUgacgguggagguGGCCCCGGGCg -3'
miRNA:   3'- cuCaaCgUCGG-UGUUG------------UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 155935 0.67 0.833308
Target:  5'- -uGgcGgAGCCgGCGAUgacgguggagguGGCCCCGGGCg -3'
miRNA:   3'- cuCaaCgUCGG-UGUUG------------UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 127515 0.67 0.807509
Target:  5'- cGGGgcagagGCAGCCGCuGCuGCCCCc-GCu -3'
miRNA:   3'- -CUCaa----CGUCGGUGuUGuCGGGGucCG- -5'
29042 3' -56.7 NC_006146.1 + 114590 0.68 0.789496
Target:  5'- -cGgcGCAGCUACGGCcugGGCCaCCucgAGGCg -3'
miRNA:   3'- cuCaaCGUCGGUGUUG---UCGG-GG---UCCG- -5'
29042 3' -56.7 NC_006146.1 + 123170 0.68 0.798578
Target:  5'- cGAGga--GGCCccggACGACgAGCUCCGGGCg -3'
miRNA:   3'- -CUCaacgUCGG----UGUUG-UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 146703 0.68 0.798578
Target:  5'- ----gGCgAGCCgGCGAUgacgguggagguGGCCCCGGGCg -3'
miRNA:   3'- cucaaCG-UCGG-UGUUG------------UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 51540 0.68 0.780271
Target:  5'- gGAGUcgggGCAGCCGCcguACGugauGaCCCUGGGCg -3'
miRNA:   3'- -CUCAa---CGUCGGUGu--UGU----C-GGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 28740 0.68 0.780271
Target:  5'- ----aGCAGCCACAuCAuCCCCAaagGGCc -3'
miRNA:   3'- cucaaCGUCGGUGUuGUcGGGGU---CCG- -5'
29042 3' -56.7 NC_006146.1 + 212 0.68 0.770912
Target:  5'- ---gUGCccCCGCGACGGUCCCcgGGGCg -3'
miRNA:   3'- cucaACGucGGUGUUGUCGGGG--UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.