miRNA display CGI


Results 141 - 160 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 3' -56.7 NC_006146.1 + 140699 0.67 0.807509
Target:  5'- ----gGCGGgCGCAGCGGCCCUcuGCu -3'
miRNA:   3'- cucaaCGUCgGUGUUGUCGGGGucCG- -5'
29042 3' -56.7 NC_006146.1 + 127515 0.67 0.807509
Target:  5'- cGGGgcagagGCAGCCGCuGCuGCCCCc-GCu -3'
miRNA:   3'- -CUCaa----CGUCGGUGuUGuCGGGGucCG- -5'
29042 3' -56.7 NC_006146.1 + 212 0.68 0.770912
Target:  5'- ---gUGCccCCGCGACGGUCCCcgGGGCg -3'
miRNA:   3'- cucaACGucGGUGUUGUCGGGG--UCCG- -5'
29042 3' -56.7 NC_006146.1 + 146703 0.68 0.798578
Target:  5'- ----gGCgAGCCgGCGAUgacgguggagguGGCCCCGGGCg -3'
miRNA:   3'- cucaaCG-UCGG-UGUUG------------UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 114590 0.68 0.789496
Target:  5'- -cGgcGCAGCUACGGCcugGGCCaCCucgAGGCg -3'
miRNA:   3'- cuCaaCGUCGGUGUUG---UCGG-GG---UCCG- -5'
29042 3' -56.7 NC_006146.1 + 51540 0.68 0.780271
Target:  5'- gGAGUcgggGCAGCCGCcguACGugauGaCCCUGGGCg -3'
miRNA:   3'- -CUCAa---CGUCGGUGu--UGU----C-GGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 137486 0.76 0.342756
Target:  5'- cGAGcgGCGG-CGCAGCGGUgCCCAGGCg -3'
miRNA:   3'- -CUCaaCGUCgGUGUUGUCG-GGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 68246 0.75 0.398803
Target:  5'- gGAGgcGCGGCUgACAGagacugcCAGCCCCGGGUg -3'
miRNA:   3'- -CUCaaCGUCGG-UGUU-------GUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 149779 0.67 0.833308
Target:  5'- -uGgcGgAGCCgGCGAUgacgguggagguGGCCCCGGGCg -3'
miRNA:   3'- cuCaaCgUCGG-UGUUG------------UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 143624 0.67 0.833308
Target:  5'- -uGgcGgAGCCgGCGAUgacgguggagguGGCCCCGGGCg -3'
miRNA:   3'- cuCaaCgUCGG-UGUUG------------UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 87216 0.67 0.833308
Target:  5'- aGGUgGCGGCCGCAGCcaucaCCUGGGUg -3'
miRNA:   3'- cUCAaCGUCGGUGUUGucg--GGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 123170 0.68 0.798578
Target:  5'- cGAGga--GGCCccggACGACgAGCUCCGGGCg -3'
miRNA:   3'- -CUCaacgUCGG----UGUUG-UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 115945 0.72 0.559597
Target:  5'- cGGUaGCGGCgGCGGCGgucGCCCCgcGGGCa -3'
miRNA:   3'- cUCAaCGUCGgUGUUGU---CGGGG--UCCG- -5'
29042 3' -56.7 NC_006146.1 + 137804 0.72 0.529612
Target:  5'- ----gGCGGCCACccGGCuGCCCCAGaGCc -3'
miRNA:   3'- cucaaCGUCGGUG--UUGuCGGGGUC-CG- -5'
29042 3' -56.7 NC_006146.1 + 137559 0.73 0.509952
Target:  5'- ----gGCGGCCACccGGCuGCCCCGGaGCa -3'
miRNA:   3'- cucaaCGUCGGUG--UUGuCGGGGUC-CG- -5'
29042 3' -56.7 NC_006146.1 + 12045 0.73 0.509952
Target:  5'- cGGG-UGCGGCCAC--CAGCCCCAuGuGCu -3'
miRNA:   3'- -CUCaACGUCGGUGuuGUCGGGGU-C-CG- -5'
29042 3' -56.7 NC_006146.1 + 8568 0.73 0.509952
Target:  5'- uAGcUGCAGCCcggGCuGCAGCaCCAGGCa -3'
miRNA:   3'- cUCaACGUCGG---UGuUGUCGgGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 40432 0.73 0.490603
Target:  5'- ----cGgGGCgGCAGCGGCCCCguAGGCg -3'
miRNA:   3'- cucaaCgUCGgUGUUGUCGGGG--UCCG- -5'
29042 3' -56.7 NC_006146.1 + 80980 0.74 0.452982
Target:  5'- --uUUGCAGCCAacGCAGCUCC-GGCg -3'
miRNA:   3'- cucAACGUCGGUguUGUCGGGGuCCG- -5'
29042 3' -56.7 NC_006146.1 + 127443 0.74 0.416988
Target:  5'- cGAGgagGCuGCCGCuccagauguGGCGGCCCgCAGGCu -3'
miRNA:   3'- -CUCaa-CGuCGGUG---------UUGUCGGG-GUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.