miRNA display CGI


Results 1 - 20 of 293 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29043 3' -63.8 NC_006146.1 + 136745 0.66 0.548859
Target:  5'- cGCAccCCCCA-CCCUCGCCggGGCUCCGg -3'
miRNA:   3'- uUGUc-GGGGUcGGGGGUGG--UCGAGGU- -5'
29043 3' -63.8 NC_006146.1 + 155828 0.66 0.548859
Target:  5'- gGugAGUCagcggAGCCCCCGCCAGUgccUCCu -3'
miRNA:   3'- -UugUCGGgg---UCGGGGGUGGUCG---AGGu -5'
29043 3' -63.8 NC_006146.1 + 131225 0.66 0.548859
Target:  5'- uGCAGgCCCAGgagCCCGCCGcCUCCAa -3'
miRNA:   3'- uUGUCgGGGUCgg-GGGUGGUcGAGGU- -5'
29043 3' -63.8 NC_006146.1 + 44730 0.66 0.548859
Target:  5'- ---uGCCCacuGGCCCCC-CUugauGGCUCCAa -3'
miRNA:   3'- uuguCGGGg--UCGGGGGuGG----UCGAGGU- -5'
29043 3' -63.8 NC_006146.1 + 127307 0.66 0.539251
Target:  5'- cGACccgaCCCGGCCuCCCGCCccGCUCCc -3'
miRNA:   3'- -UUGucg-GGGUCGG-GGGUGGu-CGAGGu -5'
29043 3' -63.8 NC_006146.1 + 29681 0.66 0.539251
Target:  5'- -uCAGCCCCGuGUCCaCUGCCcAGUUCCc -3'
miRNA:   3'- uuGUCGGGGU-CGGG-GGUGG-UCGAGGu -5'
29043 3' -63.8 NC_006146.1 + 20447 0.66 0.539251
Target:  5'- -uCAGCCCCGuGUCCaCUGCCcAGUUCCc -3'
miRNA:   3'- uuGUCGGGGU-CGGG-GGUGG-UCGAGGu -5'
29043 3' -63.8 NC_006146.1 + 17369 0.66 0.539251
Target:  5'- -uCAGCCCCGuGUCCaCUGCCcAGUUCCc -3'
miRNA:   3'- uuGUCGGGGU-CGGG-GGUGG-UCGAGGu -5'
29043 3' -63.8 NC_006146.1 + 14291 0.66 0.539251
Target:  5'- -uCAGCCCCGuGUCCaCUGCCcAGUUCCc -3'
miRNA:   3'- uuGUCGGGGU-CGGG-GGUGG-UCGAGGu -5'
29043 3' -63.8 NC_006146.1 + 11063 0.66 0.539251
Target:  5'- cGACGGCUaCAGCgCCCucucuagggaCAGCUCCAa -3'
miRNA:   3'- -UUGUCGGgGUCGgGGGug--------GUCGAGGU- -5'
29043 3' -63.8 NC_006146.1 + 151924 0.66 0.539251
Target:  5'- --uGGCUCCGGCCCugCCGCCcuCUCUAg -3'
miRNA:   3'- uugUCGGGGUCGGG--GGUGGucGAGGU- -5'
29043 3' -63.8 NC_006146.1 + 23525 0.66 0.539251
Target:  5'- -uCAGCCCCGuGUCCaCUGCCcAGUUCCc -3'
miRNA:   3'- uuGUCGGGGU-CGGG-GGUGG-UCGAGGu -5'
29043 3' -63.8 NC_006146.1 + 161992 0.66 0.539251
Target:  5'- -cCGGCUCCacgguggauaGGCaCCCUgggagACCGGCUCCAc -3'
miRNA:   3'- uuGUCGGGG----------UCG-GGGG-----UGGUCGAGGU- -5'
29043 3' -63.8 NC_006146.1 + 26603 0.66 0.539251
Target:  5'- -uCAGCCCCGuGUCCaCUGCCcAGUUCCc -3'
miRNA:   3'- uuGUCGGGGU-CGGG-GGUGG-UCGAGGu -5'
29043 3' -63.8 NC_006146.1 + 42940 0.66 0.539251
Target:  5'- --aGGUCCCGGUCCCUGCC--CUCCGc -3'
miRNA:   3'- uugUCGGGGUCGGGGGUGGucGAGGU- -5'
29043 3' -63.8 NC_006146.1 + 119067 0.66 0.539251
Target:  5'- --aGGCCCCgAGCCCCCcuCCAcGCcgCCc -3'
miRNA:   3'- uugUCGGGG-UCGGGGGu-GGU-CGa-GGu -5'
29043 3' -63.8 NC_006146.1 + 26263 0.66 0.536379
Target:  5'- --aGGCCCCGGCUccugagcucacuguCCCAaguCCAGCcCCAg -3'
miRNA:   3'- uugUCGGGGUCGG--------------GGGU---GGUCGaGGU- -5'
29043 3' -63.8 NC_006146.1 + 20107 0.66 0.536379
Target:  5'- --aGGCCCCGGCUccugagcucacuguCCCAaguCCAGCcCCAg -3'
miRNA:   3'- uugUCGGGGUCGG--------------GGGU---GGUCGaGGU- -5'
29043 3' -63.8 NC_006146.1 + 23185 0.66 0.536379
Target:  5'- --aGGCCCCGGCUccugagcucacuguCCCAaguCCAGCcCCAg -3'
miRNA:   3'- uugUCGGGGUCGG--------------GGGU---GGUCGaGGU- -5'
29043 3' -63.8 NC_006146.1 + 17029 0.66 0.536379
Target:  5'- --aGGCCCCGGCUccugagcucacuguCCCAaguCCAGCcCCAg -3'
miRNA:   3'- uugUCGGGGUCGG--------------GGGU---GGUCGaGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.