miRNA display CGI


Results 1 - 20 of 293 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29043 3' -63.8 NC_006146.1 + 82317 1.05 0.000921
Target:  5'- cAACAGCCCCAGCCCCCACCAGCUCCAu -3'
miRNA:   3'- -UUGUCGGGGUCGGGGGUGGUCGAGGU- -5'
29043 3' -63.8 NC_006146.1 + 82408 0.86 0.022189
Target:  5'- uACAGCCCCAGgCCCCAUUGGCUCCAu -3'
miRNA:   3'- uUGUCGGGGUCgGGGGUGGUCGAGGU- -5'
29043 3' -63.8 NC_006146.1 + 109075 0.83 0.04074
Target:  5'- -cCAGCCCCAcuGCCCCCACCAGCgCCc -3'
miRNA:   3'- uuGUCGGGGU--CGGGGGUGGUCGaGGu -5'
29043 3' -63.8 NC_006146.1 + 126596 0.8 0.063527
Target:  5'- cACGGCCCCAGCCCCCacuACCGGUUUg- -3'
miRNA:   3'- uUGUCGGGGUCGGGGG---UGGUCGAGgu -5'
29043 3' -63.8 NC_006146.1 + 82044 0.79 0.07813
Target:  5'- cAACAGCCCCAGgCCCCGCCGaUUCCc -3'
miRNA:   3'- -UUGUCGGGGUCgGGGGUGGUcGAGGu -5'
29043 3' -63.8 NC_006146.1 + 125670 0.78 0.088835
Target:  5'- cAACA-CCCCAGCCUCCGuCCGGUUCCAg -3'
miRNA:   3'- -UUGUcGGGGUCGGGGGU-GGUCGAGGU- -5'
29043 3' -63.8 NC_006146.1 + 33305 0.78 0.098389
Target:  5'- cAGgGGCaCCCGGCCCCCgGCCcgAGCUCCAg -3'
miRNA:   3'- -UUgUCG-GGGUCGGGGG-UGG--UCGAGGU- -5'
29043 3' -63.8 NC_006146.1 + 70620 0.77 0.103522
Target:  5'- uGCAgGCCugCCAGCCCCCGCUaggaGGCUCCAu -3'
miRNA:   3'- uUGU-CGG--GGUCGGGGGUGG----UCGAGGU- -5'
29043 3' -63.8 NC_006146.1 + 34884 0.77 0.108907
Target:  5'- cAGgGGCaCCCGGCCCCCgGCCccgAGCUCCAg -3'
miRNA:   3'- -UUgUCG-GGGUCGGGGG-UGG---UCGAGGU- -5'
29043 3' -63.8 NC_006146.1 + 34976 0.77 0.108907
Target:  5'- cAGgGGCaCCCGGCCCCCgGCCccgAGCUCCAg -3'
miRNA:   3'- -UUgUCG-GGGUCGGGGG-UGG---UCGAGGU- -5'
29043 3' -63.8 NC_006146.1 + 34419 0.77 0.108907
Target:  5'- cAGgGGCaCCCGGCCCCCgGCCccgAGCUCCAg -3'
miRNA:   3'- -UUgUCG-GGGUCGGGGG-UGG---UCGAGGU- -5'
29043 3' -63.8 NC_006146.1 + 35255 0.77 0.108907
Target:  5'- cAGgGGCaCCCGGCCCCCgGCCccgAGCUCCAg -3'
miRNA:   3'- -UUgUCG-GGGUCGGGGG-UGG---UCGAGGU- -5'
29043 3' -63.8 NC_006146.1 + 35162 0.77 0.108907
Target:  5'- cAGgGGCaCCCGGCCCCCgGCCccgAGCUCCAg -3'
miRNA:   3'- -UUgUCG-GGGUCGGGGG-UGG---UCGAGGU- -5'
29043 3' -63.8 NC_006146.1 + 35534 0.77 0.108907
Target:  5'- cAGgGGCaCCCGGCCCCCgGCCccgAGCUCCAg -3'
miRNA:   3'- -UUgUCG-GGGUCGGGGG-UGG---UCGAGGU- -5'
29043 3' -63.8 NC_006146.1 + 34047 0.77 0.108907
Target:  5'- cAGgGGCaCCCGGCCCCCgGCCccgAGCUCCAg -3'
miRNA:   3'- -UUgUCG-GGGUCGGGGG-UGG---UCGAGGU- -5'
29043 3' -63.8 NC_006146.1 + 35627 0.77 0.108907
Target:  5'- cAGgGGCaCCCGGCCCCCgGCCccgAGCUCCAg -3'
miRNA:   3'- -UUgUCG-GGGUCGGGGG-UGG---UCGAGGU- -5'
29043 3' -63.8 NC_006146.1 + 35720 0.77 0.108907
Target:  5'- cAGgGGCaCCCGGCCCCCgGCCccgAGCUCCAg -3'
miRNA:   3'- -UUgUCG-GGGUCGGGGG-UGG---UCGAGGU- -5'
29043 3' -63.8 NC_006146.1 + 33954 0.77 0.108907
Target:  5'- cAGgGGCaCCCGGCCCCCgGCCccgAGCUCCAg -3'
miRNA:   3'- -UUgUCG-GGGUCGGGGG-UGG---UCGAGGU- -5'
29043 3' -63.8 NC_006146.1 + 34140 0.77 0.108907
Target:  5'- cAGgGGCaCCCGGCCCCCgGCCccgAGCUCCAg -3'
miRNA:   3'- -UUgUCG-GGGUCGGGGG-UGG---UCGAGGU- -5'
29043 3' -63.8 NC_006146.1 + 34698 0.77 0.108907
Target:  5'- cAGgGGCaCCCGGCCCCCgGCCccgAGCUCCAg -3'
miRNA:   3'- -UUgUCG-GGGUCGGGGG-UGG---UCGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.