miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29043 5' -57.1 NC_006146.1 + 103087 0.66 0.875022
Target:  5'- cACGGAGCugUuuacuuccgagGCGGGgcagagccugGCcGCCGUCa -3'
miRNA:   3'- aUGCCUCGugG-----------UGCCUa---------CGuCGGUAG- -5'
29043 5' -57.1 NC_006146.1 + 14847 0.66 0.875022
Target:  5'- -cCGGGGCcgcgggagGCCGaGGggGCAGCCAg- -3'
miRNA:   3'- auGCCUCG--------UGGUgCCuaCGUCGGUag -5'
29043 5' -57.1 NC_006146.1 + 129378 0.66 0.86767
Target:  5'- --aGGAGC-CCGCGGAUccCGGgCGUCa -3'
miRNA:   3'- augCCUCGuGGUGCCUAc-GUCgGUAG- -5'
29043 5' -57.1 NC_006146.1 + 103671 0.66 0.860106
Target:  5'- gGCGG-GCAUCugGGGcggGCGGUCGa- -3'
miRNA:   3'- aUGCCuCGUGGugCCUa--CGUCGGUag -5'
29043 5' -57.1 NC_006146.1 + 137733 0.66 0.860106
Target:  5'- aGCGGcGGCGCgGCGG-UGCccAGCCGg- -3'
miRNA:   3'- aUGCC-UCGUGgUGCCuACG--UCGGUag -5'
29043 5' -57.1 NC_006146.1 + 14934 0.66 0.860106
Target:  5'- -uCGGAGCugcuCUACuGGAacucugGCAGCCAUg -3'
miRNA:   3'- auGCCUCGu---GGUG-CCUa-----CGUCGGUAg -5'
29043 5' -57.1 NC_006146.1 + 143015 0.66 0.860106
Target:  5'- cGgGGAGCGgCugGGAUGgggaAGCCGg- -3'
miRNA:   3'- aUgCCUCGUgGugCCUACg---UCGGUag -5'
29043 5' -57.1 NC_006146.1 + 146093 0.66 0.860106
Target:  5'- cGgGGAGCGgCugGGAUGgggaAGCCGg- -3'
miRNA:   3'- aUgCCUCGUgGugCCUACg---UCGGUag -5'
29043 5' -57.1 NC_006146.1 + 149171 0.66 0.860106
Target:  5'- cGgGGAGCGgCugGGAUGgggaAGCCGg- -3'
miRNA:   3'- aUgCCUCGUgGugCCUACg---UCGGUag -5'
29043 5' -57.1 NC_006146.1 + 152249 0.66 0.860106
Target:  5'- cGgGGAGCGgCugGGAUGgggaAGCCGg- -3'
miRNA:   3'- aUgCCUCGUgGugCCUACg---UCGGUag -5'
29043 5' -57.1 NC_006146.1 + 155327 0.66 0.860106
Target:  5'- cGgGGAGCGgCugGGAUGgggaAGCCGg- -3'
miRNA:   3'- aUgCCUCGUgGugCCUACg---UCGGUag -5'
29043 5' -57.1 NC_006146.1 + 158406 0.66 0.860106
Target:  5'- cGgGGAGCGgCugGGAUGgggaAGCCGg- -3'
miRNA:   3'- aUgCCUCGUgGugCCUACg---UCGGUag -5'
29043 5' -57.1 NC_006146.1 + 34084 0.66 0.860106
Target:  5'- -cCGGGGguCC-CGGGggGCAGCCGc- -3'
miRNA:   3'- auGCCUCguGGuGCCUa-CGUCGGUag -5'
29043 5' -57.1 NC_006146.1 + 10037 0.66 0.852335
Target:  5'- -cCGGGGCaggugagcugGCCagACGGAaccaUGCAGCCAg- -3'
miRNA:   3'- auGCCUCG----------UGG--UGCCU----ACGUCGGUag -5'
29043 5' -57.1 NC_006146.1 + 52067 0.66 0.852335
Target:  5'- aACGGuAGCAUgACGGGaggGCuGCgGUCg -3'
miRNA:   3'- aUGCC-UCGUGgUGCCUa--CGuCGgUAG- -5'
29043 5' -57.1 NC_006146.1 + 40895 0.66 0.847576
Target:  5'- cACGGAGCACCggACGacGAUGCauuuuugguguuucaGGCCGc- -3'
miRNA:   3'- aUGCCUCGUGG--UGC--CUACG---------------UCGGUag -5'
29043 5' -57.1 NC_006146.1 + 12030 0.66 0.844364
Target:  5'- -cCGGcAGCuacgUgGCGGGUGCGGCCAc- -3'
miRNA:   3'- auGCC-UCGu---GgUGCCUACGUCGGUag -5'
29043 5' -57.1 NC_006146.1 + 71310 0.66 0.844364
Target:  5'- cGCaGAGCACCGCGGccccaAGcCCGUCu -3'
miRNA:   3'- aUGcCUCGUGGUGCCuacg-UC-GGUAG- -5'
29043 5' -57.1 NC_006146.1 + 1837 0.66 0.844364
Target:  5'- gGCGGGGCACagcCGGGUGCcacaGGCacacgggaGUCa -3'
miRNA:   3'- aUGCCUCGUGgu-GCCUACG----UCGg-------UAG- -5'
29043 5' -57.1 NC_006146.1 + 92041 0.66 0.8362
Target:  5'- aUGCGGAGCugCAcCGGAgucuGCCGg- -3'
miRNA:   3'- -AUGCCUCGugGU-GCCUacguCGGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.