miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29043 5' -57.1 NC_006146.1 + 756 0.67 0.810619
Target:  5'- -cCGGcGcCGCCGCGcGUGCAGCCGa- -3'
miRNA:   3'- auGCCuC-GUGGUGCcUACGUCGGUag -5'
29043 5' -57.1 NC_006146.1 + 1687 0.67 0.810619
Target:  5'- -cCGGcGcCGCCGCGcGUGCAGCCGa- -3'
miRNA:   3'- auGCCuC-GUGGUGCcUACGUCGGUag -5'
29043 5' -57.1 NC_006146.1 + 1837 0.66 0.844364
Target:  5'- gGCGGGGCACagcCGGGUGCcacaGGCacacgggaGUCa -3'
miRNA:   3'- aUGCCUCGUGgu-GCCUACG----UCGg-------UAG- -5'
29043 5' -57.1 NC_006146.1 + 2619 0.67 0.810619
Target:  5'- -cCGGcGcCGCCGCGcGUGCAGCCGa- -3'
miRNA:   3'- auGCCuC-GUGGUGCcUACGUCGGUag -5'
29043 5' -57.1 NC_006146.1 + 3551 0.67 0.810619
Target:  5'- -cCGGcGcCGCCGCGcGUGCAGCCGa- -3'
miRNA:   3'- auGCCuC-GUGGUGCcUACGUCGGUag -5'
29043 5' -57.1 NC_006146.1 + 10037 0.66 0.852335
Target:  5'- -cCGGGGCaggugagcugGCCagACGGAaccaUGCAGCCAg- -3'
miRNA:   3'- auGCCUCG----------UGG--UGCCU----ACGUCGGUag -5'
29043 5' -57.1 NC_006146.1 + 11173 0.67 0.79274
Target:  5'- --aGGAGCGCCucuACGGGgggaaccugGUGGCCAUUc -3'
miRNA:   3'- augCCUCGUGG---UGCCUa--------CGUCGGUAG- -5'
29043 5' -57.1 NC_006146.1 + 11918 0.7 0.655391
Target:  5'- -gUGGAGCACCugGucuuUGCGGCCuccuUCu -3'
miRNA:   3'- auGCCUCGUGGugCcu--ACGUCGGu---AG- -5'
29043 5' -57.1 NC_006146.1 + 12030 0.66 0.844364
Target:  5'- -cCGGcAGCuacgUgGCGGGUGCGGCCAc- -3'
miRNA:   3'- auGCC-UCGu---GgUGCCUACGUCGGUag -5'
29043 5' -57.1 NC_006146.1 + 13410 0.67 0.780803
Target:  5'- --aGGAGCACCucaGGGUGCcuccccgggucccaGGCCAg- -3'
miRNA:   3'- augCCUCGUGGug-CCUACG--------------UCGGUag -5'
29043 5' -57.1 NC_006146.1 + 14847 0.66 0.875022
Target:  5'- -cCGGGGCcgcgggagGCCGaGGggGCAGCCAg- -3'
miRNA:   3'- auGCCUCG--------UGGUgCCuaCGUCGGUag -5'
29043 5' -57.1 NC_006146.1 + 14934 0.66 0.860106
Target:  5'- -uCGGAGCugcuCUACuGGAacucugGCAGCCAUg -3'
miRNA:   3'- auGCCUCGu---GGUG-CCUa-----CGUCGGUAg -5'
29043 5' -57.1 NC_006146.1 + 16488 0.67 0.780803
Target:  5'- --aGGAGCACCucaGGGUGCcuccccgggucccaGGCCAg- -3'
miRNA:   3'- augCCUCGUGGug-CCUACG--------------UCGGUag -5'
29043 5' -57.1 NC_006146.1 + 19566 0.67 0.780803
Target:  5'- --aGGAGCACCucaGGGUGCcuccccgggucccaGGCCAg- -3'
miRNA:   3'- augCCUCGUGGug-CCUACG--------------UCGGUag -5'
29043 5' -57.1 NC_006146.1 + 21643 0.73 0.484863
Target:  5'- cGCGGAGCGgCACGGcauucccGUGGCCAUUg -3'
miRNA:   3'- aUGCCUCGUgGUGCCua-----CGUCGGUAG- -5'
29043 5' -57.1 NC_006146.1 + 22644 0.67 0.780803
Target:  5'- --aGGAGCACCucaGGGUGCcuccccgggucccaGGCCAg- -3'
miRNA:   3'- augCCUCGUGGug-CCUACG--------------UCGGUag -5'
29043 5' -57.1 NC_006146.1 + 25722 0.67 0.780803
Target:  5'- --aGGAGCACCucaGGGUGCcuccccgggucccaGGCCAg- -3'
miRNA:   3'- augCCUCGUGGug-CCUACG--------------UCGGUag -5'
29043 5' -57.1 NC_006146.1 + 28800 0.67 0.780803
Target:  5'- --aGGAGCACCucaGGGUGCcuccccgggucccaGGCCAg- -3'
miRNA:   3'- augCCUCGUGGug-CCUACG--------------UCGGUag -5'
29043 5' -57.1 NC_006146.1 + 32970 0.67 0.827849
Target:  5'- aACGGGGCGCgCugGGucGCGGCUg-- -3'
miRNA:   3'- aUGCCUCGUG-GugCCuaCGUCGGuag -5'
29043 5' -57.1 NC_006146.1 + 34084 0.66 0.860106
Target:  5'- -cCGGGGguCC-CGGGggGCAGCCGc- -3'
miRNA:   3'- auGCCUCguGGuGCCUa-CGUCGGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.