miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29043 5' -57.1 NC_006146.1 + 82352 1.08 0.002313
Target:  5'- uUACGGAGCACCACGGAUGCAGCCAUCg -3'
miRNA:   3'- -AUGCCUCGUGGUGCCUACGUCGGUAG- -5'
29043 5' -57.1 NC_006146.1 + 16488 0.67 0.780803
Target:  5'- --aGGAGCACCucaGGGUGCcuccccgggucccaGGCCAg- -3'
miRNA:   3'- augCCUCGUGGug-CCUACG--------------UCGGUag -5'
29043 5' -57.1 NC_006146.1 + 22644 0.67 0.780803
Target:  5'- --aGGAGCACCucaGGGUGCcuccccgggucccaGGCCAg- -3'
miRNA:   3'- augCCUCGUGGug-CCUACG--------------UCGGUag -5'
29043 5' -57.1 NC_006146.1 + 129378 0.66 0.86767
Target:  5'- --aGGAGC-CCGCGGAUccCGGgCGUCa -3'
miRNA:   3'- augCCUCGuGGUGCCUAc-GUCgGUAG- -5'
29043 5' -57.1 NC_006146.1 + 56770 0.71 0.577678
Target:  5'- cGCGGAGCACgCGCaggccuccucggugaGcGcgGCGGCCGUCu -3'
miRNA:   3'- aUGCCUCGUG-GUG---------------C-CuaCGUCGGUAG- -5'
29043 5' -57.1 NC_006146.1 + 128269 0.7 0.624649
Target:  5'- cUACGuGAgGC-CCACGGcgGCGGCCGa- -3'
miRNA:   3'- -AUGC-CU-CGuGGUGCCuaCGUCGGUag -5'
29043 5' -57.1 NC_006146.1 + 90136 0.69 0.685965
Target:  5'- aGCGGAGCAggaggcaGCGGAgcaggagGCAGCCGa- -3'
miRNA:   3'- aUGCCUCGUgg-----UGCCUa------CGUCGGUag -5'
29043 5' -57.1 NC_006146.1 + 60970 0.68 0.735903
Target:  5'- gUGgGGGGuCACCuuggUGGAUGUgcaAGCCAUCa -3'
miRNA:   3'- -AUgCCUC-GUGGu---GCCUACG---UCGGUAG- -5'
29043 5' -57.1 NC_006146.1 + 54025 0.68 0.75531
Target:  5'- --aGGuGGCGCCucCGGAggGCGGCCAUg -3'
miRNA:   3'- augCC-UCGUGGu-GCCUa-CGUCGGUAg -5'
29043 5' -57.1 NC_006146.1 + 13410 0.67 0.780803
Target:  5'- --aGGAGCACCucaGGGUGCcuccccgggucccaGGCCAg- -3'
miRNA:   3'- augCCUCGUGGug-CCUACG--------------UCGGUag -5'
29043 5' -57.1 NC_006146.1 + 150560 0.68 0.764854
Target:  5'- gGCaGGAGaACaCGCGGAucUGCuGGCCAUCg -3'
miRNA:   3'- aUG-CCUCgUG-GUGCCU--ACG-UCGGUAG- -5'
29043 5' -57.1 NC_006146.1 + 128199 0.68 0.745656
Target:  5'- aGgGGGGCGCCGCGGc-GCcgGGCCAg- -3'
miRNA:   3'- aUgCCUCGUGGUGCCuaCG--UCGGUag -5'
29043 5' -57.1 NC_006146.1 + 56376 0.73 0.484863
Target:  5'- gGCGGAGCACCGCcgccGGGUaagcGUGGCCGcUCg -3'
miRNA:   3'- aUGCCUCGUGGUG----CCUA----CGUCGGU-AG- -5'
29043 5' -57.1 NC_006146.1 + 65474 0.68 0.77428
Target:  5'- gGCGG-GCugUGCGGGUGCugagcuGGCCGg- -3'
miRNA:   3'- aUGCCuCGugGUGCCUACG------UCGGUag -5'
29043 5' -57.1 NC_006146.1 + 132989 0.72 0.504083
Target:  5'- -gUGGAG-ACCGCGGGUGCGGUgAUUg -3'
miRNA:   3'- auGCCUCgUGGUGCCUACGUCGgUAG- -5'
29043 5' -57.1 NC_006146.1 + 151402 0.68 0.735903
Target:  5'- gGCGGGGgAUggCGCGGcgGCAGCUGUa -3'
miRNA:   3'- aUGCCUCgUG--GUGCCuaCGUCGGUAg -5'
29043 5' -57.1 NC_006146.1 + 113706 0.68 0.77428
Target:  5'- -cCGGGG-ACgGCGGcgGCAGCCGg- -3'
miRNA:   3'- auGCCUCgUGgUGCCuaCGUCGGUag -5'
29043 5' -57.1 NC_006146.1 + 19566 0.67 0.780803
Target:  5'- --aGGAGCACCucaGGGUGCcuccccgggucccaGGCCAg- -3'
miRNA:   3'- augCCUCGUGGug-CCUACG--------------UCGGUag -5'
29043 5' -57.1 NC_006146.1 + 123621 0.72 0.533505
Target:  5'- aGCGGAGguCCAC----GCAGCCGUCg -3'
miRNA:   3'- aUGCCUCguGGUGccuaCGUCGGUAG- -5'
29043 5' -57.1 NC_006146.1 + 54597 0.7 0.645152
Target:  5'- uUGgGGAGaggACCGCGGggGC-GCCAUCc -3'
miRNA:   3'- -AUgCCUCg--UGGUGCCuaCGuCGGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.