miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29044 3' -58.9 NC_006146.1 + 96762 0.66 0.850867
Target:  5'- uGCCugCUGaguaggacacguUCCaCCUCUCGCCUUc- -3'
miRNA:   3'- gCGGugGAC------------AGGaGGAGAGUGGGAcc -5'
29044 3' -58.9 NC_006146.1 + 98722 0.66 0.850867
Target:  5'- gGCCGCCgcGUCCUCgUCg-ACCCg-- -3'
miRNA:   3'- gCGGUGGa-CAGGAGgAGagUGGGacc -5'
29044 3' -58.9 NC_006146.1 + 100083 0.66 0.850867
Target:  5'- gGCCG--UGuUCCUCCUC-CACCC-GGa -3'
miRNA:   3'- gCGGUggAC-AGGAGGAGaGUGGGaCC- -5'
29044 3' -58.9 NC_006146.1 + 23198 0.66 0.846256
Target:  5'- cCGCCGCCU-UCCuggcccuguugcucaUCCuUCUCuACgCCUGGa -3'
miRNA:   3'- -GCGGUGGAcAGG---------------AGG-AGAG-UG-GGACC- -5'
29044 3' -58.9 NC_006146.1 + 32585 0.66 0.843145
Target:  5'- cCGCCAgCUugcaGUUCacgcgCCUCUCACCCa-- -3'
miRNA:   3'- -GCGGUgGA----CAGGa----GGAGAGUGGGacc -5'
29044 3' -58.9 NC_006146.1 + 30813 0.66 0.843145
Target:  5'- cCGCCACCc--CCUCUUC-CACCCc-- -3'
miRNA:   3'- -GCGGUGGacaGGAGGAGaGUGGGacc -5'
29044 3' -58.9 NC_006146.1 + 52430 0.66 0.843145
Target:  5'- gGCC-UCUGcCCUCCaguuuggggUCgaCGCCCUGGa -3'
miRNA:   3'- gCGGuGGACaGGAGG---------AGa-GUGGGACC- -5'
29044 3' -58.9 NC_006146.1 + 128137 0.66 0.835244
Target:  5'- gCGCCGCCUG-Ca-CCUgUCgGCCCUGc -3'
miRNA:   3'- -GCGGUGGACaGgaGGAgAG-UGGGACc -5'
29044 3' -58.9 NC_006146.1 + 122913 0.66 0.834444
Target:  5'- cCGCCACCaG-CCaCCUCUgaccccaCGCUCUGGc -3'
miRNA:   3'- -GCGGUGGaCaGGaGGAGA-------GUGGGACC- -5'
29044 3' -58.9 NC_006146.1 + 127435 0.66 0.82717
Target:  5'- aCGuCCACCaguggGUCCcgUCCuUCggACCCUGGu -3'
miRNA:   3'- -GC-GGUGGa----CAGG--AGG-AGagUGGGACC- -5'
29044 3' -58.9 NC_006146.1 + 76985 0.66 0.82717
Target:  5'- cCGCCGCCUucuacgCCUCCgugCUgGCCCc-- -3'
miRNA:   3'- -GCGGUGGAca----GGAGGa--GAgUGGGacc -5'
29044 3' -58.9 NC_006146.1 + 41610 0.66 0.81893
Target:  5'- --gCACCUGUCCcugaCCaagcugCUgACCCUGGg -3'
miRNA:   3'- gcgGUGGACAGGa---GGa-----GAgUGGGACC- -5'
29044 3' -58.9 NC_006146.1 + 78306 0.66 0.81893
Target:  5'- uCGCuCAggUCU-UCCUCCUCaucuUCAUCCUGGg -3'
miRNA:   3'- -GCG-GU--GGAcAGGAGGAG----AGUGGGACC- -5'
29044 3' -58.9 NC_006146.1 + 35575 0.66 0.810532
Target:  5'- gCGCC-CgUG-CCUCCcCUCAgagccauucCCCUGGg -3'
miRNA:   3'- -GCGGuGgACaGGAGGaGAGU---------GGGACC- -5'
29044 3' -58.9 NC_006146.1 + 50761 0.66 0.810532
Target:  5'- gGCCGuCCUcGUCCUCgCUCUC-CUCggUGGu -3'
miRNA:   3'- gCGGU-GGA-CAGGAG-GAGAGuGGG--ACC- -5'
29044 3' -58.9 NC_006146.1 + 39703 0.67 0.805421
Target:  5'- gCGCCgcuccggaggcagagGCCUGcaccagCUUCUUCUCGCgCUGGu -3'
miRNA:   3'- -GCGG---------------UGGACa-----GGAGGAGAGUGgGACC- -5'
29044 3' -58.9 NC_006146.1 + 106653 0.67 0.796784
Target:  5'- gGCCGgCUGgucagggCCgUCCUCUCcccgggcacgggauCCCUGGg -3'
miRNA:   3'- gCGGUgGACa------GG-AGGAGAGu-------------GGGACC- -5'
29044 3' -58.9 NC_006146.1 + 129810 0.67 0.79329
Target:  5'- uGCaCGCCUGgcUCC-CCUCgcuguCCCUGGc -3'
miRNA:   3'- gCG-GUGGAC--AGGaGGAGagu--GGGACC- -5'
29044 3' -58.9 NC_006146.1 + 105975 0.67 0.79329
Target:  5'- aGCCcUCUGg-CUUCUCUaACCCUGGa -3'
miRNA:   3'- gCGGuGGACagGAGGAGAgUGGGACC- -5'
29044 3' -58.9 NC_006146.1 + 9425 0.67 0.792413
Target:  5'- uGCCAUCcc-CCUCCUUcauagcuUCACCCUGu -3'
miRNA:   3'- gCGGUGGacaGGAGGAG-------AGUGGGACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.