miRNA display CGI


Results 1 - 20 of 247 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29044 5' -49.2 NC_006146.1 + 40324 0.66 0.999224
Target:  5'- gGCC-GGAGGAGggUAgccgugGUggUAggcguGGGGa -3'
miRNA:   3'- aCGGuCCUCCUCuuGU------UAuuGU-----UCCC- -5'
29044 5' -49.2 NC_006146.1 + 24565 0.66 0.999224
Target:  5'- gGCCAaGAGGAGcGACAGUcuaGACGccGGa -3'
miRNA:   3'- aCGGUcCUCCUC-UUGUUA---UUGUucCC- -5'
29044 5' -49.2 NC_006146.1 + 66745 0.66 0.999122
Target:  5'- aGUCAGGGGGuGGGCAugccgauuugaaaaaAUAGacGGGGu -3'
miRNA:   3'- aCGGUCCUCCuCUUGU---------------UAUUguUCCC- -5'
29044 5' -49.2 NC_006146.1 + 170450 0.66 0.999067
Target:  5'- gUGCCGGGGGacccGGGGGCGugucccgcgaccCGAGGGg -3'
miRNA:   3'- -ACGGUCCUC----CUCUUGUuauu--------GUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 168587 0.66 0.999067
Target:  5'- gUGCCGGGGGacccGGGGGCGugucccgcgaccCGAGGGg -3'
miRNA:   3'- -ACGGUCCUC----CUCUUGUuauu--------GUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 169519 0.66 0.999067
Target:  5'- gUGCCGGGGGacccGGGGGCGugucccgcgaccCGAGGGg -3'
miRNA:   3'- -ACGGUCCUC----CUCUUGUuauu--------GUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 12940 0.66 0.999048
Target:  5'- cGCCAGGAGG-GAaaacuACAucauUAACGGGc- -3'
miRNA:   3'- aCGGUCCUCCuCU-----UGUu---AUUGUUCcc -5'
29044 5' -49.2 NC_006146.1 + 39533 0.66 0.999048
Target:  5'- gGCUGGG-GGAGG-CGGc-GCAAGGGc -3'
miRNA:   3'- aCGGUCCuCCUCUuGUUauUGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 165384 0.66 0.999048
Target:  5'- cGCCAGGGGucAGuGCGAUGACuauGGa -3'
miRNA:   3'- aCGGUCCUCc-UCuUGUUAUUGuu-CCc -5'
29044 5' -49.2 NC_006146.1 + 72512 0.66 0.999048
Target:  5'- cGCCugcGGAGGAGcgGACGGcuGCGgcucucGGGGa -3'
miRNA:   3'- aCGGu--CCUCCUC--UUGUUauUGU------UCCC- -5'
29044 5' -49.2 NC_006146.1 + 133113 0.66 0.999028
Target:  5'- aGCCGGGuagaaacAGGAGAaauggagauGCuuUAACcuuGGGGg -3'
miRNA:   3'- aCGGUCC-------UCCUCU---------UGuuAUUGu--UCCC- -5'
29044 5' -49.2 NC_006146.1 + 158348 0.66 0.998838
Target:  5'- gGCUcgugggagaGGcGGGGAGGACAGagAGgGAGGGa -3'
miRNA:   3'- aCGG---------UC-CUCCUCUUGUUa-UUgUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 161277 0.66 0.998838
Target:  5'- cGCCuGGGGGAGAccgaggucACGA-AGCAGGa- -3'
miRNA:   3'- aCGGuCCUCCUCU--------UGUUaUUGUUCcc -5'
29044 5' -49.2 NC_006146.1 + 137891 0.66 0.998838
Target:  5'- cGgCAGGGGGuccccguGGACAGggcCGGGGGu -3'
miRNA:   3'- aCgGUCCUCCu------CUUGUUauuGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 136019 0.66 0.998838
Target:  5'- gGUaGGGGGGGGAGgGAUuACAcuauAGGGu -3'
miRNA:   3'- aCGgUCCUCCUCUUgUUAuUGU----UCCC- -5'
29044 5' -49.2 NC_006146.1 + 76390 0.66 0.998838
Target:  5'- cGCCGGG-GGAGG-----GACcGGGGg -3'
miRNA:   3'- aCGGUCCuCCUCUuguuaUUGuUCCC- -5'
29044 5' -49.2 NC_006146.1 + 101635 0.66 0.998838
Target:  5'- gGCCAGcugcaucuucGAGGAGGACccgGACcuggcccuGGGGGg -3'
miRNA:   3'- aCGGUC----------CUCCUCUUGuuaUUG--------UUCCC- -5'
29044 5' -49.2 NC_006146.1 + 142957 0.66 0.998838
Target:  5'- gGCUcgugggagaGGcGGGGAGGACAGagAGgGAGGGa -3'
miRNA:   3'- aCGG---------UC-CUCCUCUUGUUa-UUgUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 149113 0.66 0.998838
Target:  5'- gGCUcgugggagaGGcGGGGAGGACAGagAGgGAGGGa -3'
miRNA:   3'- aCGG---------UC-CUCCUCUUGUUa-UUgUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 155269 0.66 0.998838
Target:  5'- gGCUcgugggagaGGcGGGGAGGACAGagAGgGAGGGa -3'
miRNA:   3'- aCGG---------UC-CUCCUCUUGUUa-UUgUUCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.