miRNA display CGI


Results 1 - 20 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29044 5' -49.2 NC_006146.1 + 83742 1.11 0.010417
Target:  5'- aUGCCAGGAGGAGAACAAUAACAAGGGc -3'
miRNA:   3'- -ACGGUCCUCCUCUUGUUAUUGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 166944 0.82 0.475056
Target:  5'- aGCCAGGGGGAGugcuGCugcAUGAgGAGGGg -3'
miRNA:   3'- aCGGUCCUCCUCu---UGu--UAUUgUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 59116 0.8 0.598621
Target:  5'- aUGCCAGGGGaGGGAGCu---AUAGGGGa -3'
miRNA:   3'- -ACGGUCCUC-CUCUUGuuauUGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 166686 0.79 0.651931
Target:  5'- gGCCuggcaGGGGGGAGAcgggGCAAUGGgAGGGGg -3'
miRNA:   3'- aCGG-----UCCUCCUCU----UGUUAUUgUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 147882 0.78 0.694321
Target:  5'- gGCCGGGgagggaggcgGGGAGGACAGgc-CAGGGGa -3'
miRNA:   3'- aCGGUCC----------UCCUCUUGUUauuGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 144804 0.78 0.694321
Target:  5'- gGCCGGGgagggaggcgGGGAGGACAGgc-CAGGGGa -3'
miRNA:   3'- aCGGUCC----------UCCUCUUGUUauuGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 141726 0.78 0.694321
Target:  5'- gGCCGGGgagggaggcgGGGAGGACAGgc-CAGGGGa -3'
miRNA:   3'- aCGGUCC----------UCCUCUUGUUauuGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 154038 0.78 0.694321
Target:  5'- gGCCGGGgagggaggcgGGGAGGACAGgc-CAGGGGa -3'
miRNA:   3'- aCGGUCC----------UCCUCUUGUUauuGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 150960 0.78 0.694321
Target:  5'- gGCCGGGgagggaggcgGGGAGGACAGgc-CAGGGGa -3'
miRNA:   3'- aCGGUCC----------UCCUCUUGUUauuGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 157116 0.78 0.694321
Target:  5'- gGCCGGGgagggaggcgGGGAGGACAGgc-CAGGGGa -3'
miRNA:   3'- aCGGUCC----------UCCUCUUGUUauuGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 68960 0.78 0.704802
Target:  5'- aGCCAGGGGGcAGGGCAGagccgcUGAUAGGGa -3'
miRNA:   3'- aCGGUCCUCC-UCUUGUU------AUUGUUCCc -5'
29044 5' -49.2 NC_006146.1 + 78588 0.78 0.725554
Target:  5'- aGCCAGG-GGAGAGgGGUGcuGCGAGGu -3'
miRNA:   3'- aCGGUCCuCCUCUUgUUAU--UGUUCCc -5'
29044 5' -49.2 NC_006146.1 + 89561 0.77 0.735803
Target:  5'- cGaCCAcGAGGGGGAUGAUGAUGAGGGg -3'
miRNA:   3'- aC-GGUcCUCCUCUUGUUAUUGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 4845 0.77 0.735804
Target:  5'- aGCagcauGGAGGGGAAUAggGGCAGGGGc -3'
miRNA:   3'- aCGgu---CCUCCUCUUGUuaUUGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 125698 0.77 0.735804
Target:  5'- aGuCCGGGAGGGGAGacggaggaaGAUGAgGAGGGg -3'
miRNA:   3'- aC-GGUCCUCCUCUUg--------UUAUUgUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 39567 0.77 0.755998
Target:  5'- gGCCAGGAuccuGGAGGGCA-UGAaGAGGGa -3'
miRNA:   3'- aCGGUCCU----CCUCUUGUuAUUgUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 51579 0.76 0.79488
Target:  5'- cGCCGGGAGGGGccCGGgggAGCcaGAGGGg -3'
miRNA:   3'- aCGGUCCUCCUCuuGUUa--UUG--UUCCC- -5'
29044 5' -49.2 NC_006146.1 + 116800 0.76 0.804225
Target:  5'- gGCCAcGGGGGGGAGCAGguu--AGGGu -3'
miRNA:   3'- aCGGU-CCUCCUCUUGUUauuguUCCC- -5'
29044 5' -49.2 NC_006146.1 + 83022 0.76 0.804225
Target:  5'- gUGCuuCAGGAGGucgauguauucAGAGCAGUcaGGCAGGGGa -3'
miRNA:   3'- -ACG--GUCCUCC-----------UCUUGUUA--UUGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 44586 0.75 0.830336
Target:  5'- aUGCCAGGAGGAcgagucgccugagGAACAGaGGCAGGa- -3'
miRNA:   3'- -ACGGUCCUCCU-------------CUUGUUaUUGUUCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.