miRNA display CGI


Results 21 - 40 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29044 5' -49.2 NC_006146.1 + 146035 0.66 0.998838
Target:  5'- gGCUcgugggagaGGcGGGGAGGACAGagAGgGAGGGa -3'
miRNA:   3'- aCGG---------UC-CUCCUCUUGUUa-UUgUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 142957 0.66 0.998838
Target:  5'- gGCUcgugggagaGGcGGGGAGGACAGagAGgGAGGGa -3'
miRNA:   3'- aCGG---------UC-CUCCUCUUGUUa-UUgUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 101635 0.66 0.998838
Target:  5'- gGCCAGcugcaucuucGAGGAGGACccgGACcuggcccuGGGGGg -3'
miRNA:   3'- aCGGUC----------CUCCUCUUGuuaUUG--------UUCCC- -5'
29044 5' -49.2 NC_006146.1 + 76390 0.66 0.998838
Target:  5'- cGCCGGG-GGAGG-----GACcGGGGg -3'
miRNA:   3'- aCGGUCCuCCUCUuguuaUUGuUCCC- -5'
29044 5' -49.2 NC_006146.1 + 146707 0.66 0.998815
Target:  5'- aGCCGgcgaugacgguGGAGGuggccccgggcgcAGGGCAAggcgaugGGCGAGGGa -3'
miRNA:   3'- aCGGU-----------CCUCC-------------UCUUGUUa------UUGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 148050 0.66 0.998815
Target:  5'- gGCCcaugaugaugAGGAGGAugaugauGAGCAggAGCAccAGGGc -3'
miRNA:   3'- aCGG----------UCCUCCU-------CUUGUuaUUGU--UCCC- -5'
29044 5' -49.2 NC_006146.1 + 155941 0.66 0.998815
Target:  5'- aGCCGgcgaugacgguGGAGGuggccccgggcgcAGGGCAAggcgaugGGCGAGGGa -3'
miRNA:   3'- aCGGU-----------CCUCC-------------UCUUGUUa------UUGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 143630 0.66 0.998815
Target:  5'- aGCCGgcgaugacgguGGAGGuggccccgggcgcAGGGCAAggcgaugGGCGAGGGa -3'
miRNA:   3'- aCGGU-----------CCUCC-------------UCUUGUUa------UUGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 152863 0.66 0.998815
Target:  5'- aGCCGgcgaugacgguGGAGGuggccccgggcgcAGGGCAAggcgaugGGCGAGGGa -3'
miRNA:   3'- aCGGU-----------CCUCC-------------UCUUGUUa------UUGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 149785 0.66 0.998815
Target:  5'- aGCCGgcgaugacgguGGAGGuggccccgggcgcAGGGCAAggcgaugGGCGAGGGa -3'
miRNA:   3'- aCGGU-----------CCUCC-------------UCUUGUUa------UUGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 45551 0.66 0.99859
Target:  5'- gGCCAGGcAGGGGAGgGAaGACAc--- -3'
miRNA:   3'- aCGGUCC-UCCUCUUgUUaUUGUuccc -5'
29044 5' -49.2 NC_006146.1 + 44006 0.66 0.99859
Target:  5'- gGCC-GGAGGuGGAU-GUGGgGAGGGu -3'
miRNA:   3'- aCGGuCCUCCuCUUGuUAUUgUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 139506 0.66 0.99859
Target:  5'- gUGCCugguguuuaguAGGAGGAGGucuGUAugggggcCAAGGGg -3'
miRNA:   3'- -ACGG-----------UCCUCCUCUuguUAUu------GUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 51867 0.66 0.99859
Target:  5'- aGCCcgGGGAuGGGGAugAAgagGgGAGGGu -3'
miRNA:   3'- aCGG--UCCU-CCUCUugUUau-UgUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 51837 0.66 0.998299
Target:  5'- gGCguGGAGGGGGGCu----CGGGGc -3'
miRNA:   3'- aCGguCCUCCUCUUGuuauuGUUCCc -5'
29044 5' -49.2 NC_006146.1 + 44528 0.66 0.998299
Target:  5'- gGCUgacGGGcGGAGGACGGUG--GGGGGc -3'
miRNA:   3'- aCGG---UCCuCCUCUUGUUAUugUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 86420 0.66 0.998299
Target:  5'- aGCCAgaaucGGuAGGGGGGCAGcugGGCuugAAGGGg -3'
miRNA:   3'- aCGGU-----CC-UCCUCUUGUUa--UUG---UUCCC- -5'
29044 5' -49.2 NC_006146.1 + 47158 0.66 0.998299
Target:  5'- aGCCugucccuGAGGAGGGCAu--ACuGGGGa -3'
miRNA:   3'- aCGGuc-----CUCCUCUUGUuauUGuUCCC- -5'
29044 5' -49.2 NC_006146.1 + 36846 0.66 0.998299
Target:  5'- -aUCAGGAGuGGAaaGCA--GACAGGGGg -3'
miRNA:   3'- acGGUCCUCcUCU--UGUuaUUGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 167655 0.67 0.997995
Target:  5'- gUGCCGGGGGcccGGGGGCGugucccgcgaccCGAGGGg -3'
miRNA:   3'- -ACGGUCCUC---CUCUUGUuauu--------GUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.