miRNA display CGI


Results 1 - 20 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29044 5' -49.2 NC_006146.1 + 3231 0.7 0.979636
Target:  5'- cUGCC-GGAGGAuguGAAgGGgggGAUAGGGGa -3'
miRNA:   3'- -ACGGuCCUCCU---CUUgUUa--UUGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 3780 0.69 0.987389
Target:  5'- cGCgGGGGGGGGGGgGGggggggGGCAcgcGGGGg -3'
miRNA:   3'- aCGgUCCUCCUCUUgUUa-----UUGU---UCCC- -5'
29044 5' -49.2 NC_006146.1 + 4845 0.77 0.735804
Target:  5'- aGCagcauGGAGGGGAAUAggGGCAGGGGc -3'
miRNA:   3'- aCGgu---CCUCCUCUUGUuaUUGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 5641 0.68 0.992637
Target:  5'- gGCCAuGGcGGGGGACAGgggGACGAGc- -3'
miRNA:   3'- aCGGU-CCuCCUCUUGUUa--UUGUUCcc -5'
29044 5' -49.2 NC_006146.1 + 5991 0.71 0.965548
Target:  5'- gGCaauGGAGGAGAAgGAgauggaggcAACGAGGGc -3'
miRNA:   3'- aCGgu-CCUCCUCUUgUUa--------UUGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 7996 0.7 0.981842
Target:  5'- cGUUGGGAGGAGGcgcgcgGCAGgacuGCGAGGa -3'
miRNA:   3'- aCGGUCCUCCUCU------UGUUau--UGUUCCc -5'
29044 5' -49.2 NC_006146.1 + 12940 0.66 0.999048
Target:  5'- cGCCAGGAGG-GAaaacuACAucauUAACGGGc- -3'
miRNA:   3'- aCGGUCCUCCuCU-----UGUu---AUUGUUCcc -5'
29044 5' -49.2 NC_006146.1 + 14016 0.7 0.977238
Target:  5'- gUGCUggaAGGcGGAGGGCAGggAGCAggcGGGGg -3'
miRNA:   3'- -ACGG---UCCuCCUCUUGUUa-UUGU---UCCC- -5'
29044 5' -49.2 NC_006146.1 + 14821 0.7 0.971828
Target:  5'- gGCC-GGAGGAGGGCAcgGuCucGGGc -3'
miRNA:   3'- aCGGuCCUCCUCUUGUuaUuGuuCCC- -5'
29044 5' -49.2 NC_006146.1 + 15024 0.7 0.981842
Target:  5'- uUGCCAgGGAGGGGcGCc-UGGCcAGGGc -3'
miRNA:   3'- -ACGGU-CCUCCUCuUGuuAUUGuUCCC- -5'
29044 5' -49.2 NC_006146.1 + 15053 0.74 0.886925
Target:  5'- cGCCGGGccugcgAGGAG-GCAcUGGCGGGGGc -3'
miRNA:   3'- aCGGUCC------UCCUCuUGUuAUUGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 15559 0.67 0.997564
Target:  5'- gGCCuucgucucGGGucccuGGGAGGACAGgcgcgucGGCGAGGGc -3'
miRNA:   3'- aCGG--------UCC-----UCCUCUUGUUa------UUGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 18240 0.71 0.9688
Target:  5'- gGCCuGGGGGAGcuCAugGACAgccuGGGGa -3'
miRNA:   3'- aCGGuCCUCCUCuuGUuaUUGU----UCCC- -5'
29044 5' -49.2 NC_006146.1 + 18861 0.75 0.848228
Target:  5'- cUGCCGGGGuGGuGGACGu--GCGGGGGc -3'
miRNA:   3'- -ACGGUCCU-CCuCUUGUuauUGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 20133 0.67 0.997564
Target:  5'- cUGCUGGGggccaaaaAGGAGGACGugcacuACAAGGa -3'
miRNA:   3'- -ACGGUCC--------UCCUCUUGUuau---UGUUCCc -5'
29044 5' -49.2 NC_006146.1 + 21585 0.69 0.990288
Target:  5'- aGCCuaAGGGGGGGAuCAAgggGGCAAGa- -3'
miRNA:   3'- aCGG--UCCUCCUCUuGUUa--UUGUUCcc -5'
29044 5' -49.2 NC_006146.1 + 21853 0.67 0.996799
Target:  5'- aGCgGGaAGGAGAGCAGccgagccacccccACAAGGGg -3'
miRNA:   3'- aCGgUCcUCCUCUUGUUau-----------UGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 21908 0.68 0.991527
Target:  5'- cGCCgAGGAGGAGG-----GGCGGGGa -3'
miRNA:   3'- aCGG-UCCUCCUCUuguuaUUGUUCCc -5'
29044 5' -49.2 NC_006146.1 + 21988 0.7 0.971535
Target:  5'- gGCgGGGAagcugguGGAGGGCAAgacccCAAGGGa -3'
miRNA:   3'- aCGgUCCU-------CCUCUUGUUauu--GUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 23969 0.71 0.958344
Target:  5'- gGUCGGGuGGGGGAGCcg-GAgAGGGGg -3'
miRNA:   3'- aCGGUCC-UCCUCUUGuuaUUgUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.