miRNA display CGI


Results 1 - 20 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29044 5' -49.2 NC_006146.1 + 83742 1.11 0.010417
Target:  5'- aUGCCAGGAGGAGAACAAUAACAAGGGc -3'
miRNA:   3'- -ACGGUCCUCCUCUUGUUAUUGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 166870 0.72 0.945708
Target:  5'- gGCgGGaGGGGGGAGCGGagGGCGAGGa -3'
miRNA:   3'- aCGgUC-CUCCUCUUGUUa-UUGUUCCc -5'
29044 5' -49.2 NC_006146.1 + 109346 0.71 0.954381
Target:  5'- gGCCcucgGGGuGGGGAAUAGacAGCGAGGGc -3'
miRNA:   3'- aCGG----UCCuCCUCUUGUUa-UUGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 66745 0.66 0.999122
Target:  5'- aGUCAGGGGGuGGGCAugccgauuugaaaaaAUAGacGGGGu -3'
miRNA:   3'- aCGGUCCUCCuCUUGU---------------UAUUguUCCC- -5'
29044 5' -49.2 NC_006146.1 + 89561 0.77 0.735803
Target:  5'- cGaCCAcGAGGGGGAUGAUGAUGAGGGg -3'
miRNA:   3'- aC-GGUcCUCCUCUUGUUAUUGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 39567 0.77 0.755998
Target:  5'- gGCCAGGAuccuGGAGGGCA-UGAaGAGGGa -3'
miRNA:   3'- aCGGUCCU----CCUCUUGUuAUUgUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 42257 0.74 0.893953
Target:  5'- cGCCguccccgaaugcGGGAGGAGGAUggguGGUGGCGGGGa -3'
miRNA:   3'- aCGG------------UCCUCCUCUUG----UUAUUGUUCCc -5'
29044 5' -49.2 NC_006146.1 + 156519 0.73 0.907257
Target:  5'- gGCCcGGAGGGGAGCGGgagGCGAGa- -3'
miRNA:   3'- aCGGuCCUCCUCUUGUUau-UGUUCcc -5'
29044 5' -49.2 NC_006146.1 + 168225 0.73 0.919539
Target:  5'- gGCCggcGGGAGGGGccGGCGccuGCAGGGGg -3'
miRNA:   3'- aCGG---UCCUCCUC--UUGUuauUGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 170680 0.72 0.936017
Target:  5'- gGCCAGGGGcgccccGGGGACcGUcGCGGGGGc -3'
miRNA:   3'- aCGGUCCUC------CUCUUGuUAuUGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 166735 0.73 0.921871
Target:  5'- aGCCAaugggcauggguuucGGAcGGGAccaGCAGUGGCGAGGGg -3'
miRNA:   3'- aCGGU---------------CCUcCUCU---UGUUAUUGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 167293 0.73 0.919539
Target:  5'- gGCCggcGGGAGGGGccGGCGccuGCAGGGGg -3'
miRNA:   3'- aCGG---UCCUCCUC--UUGUuauUGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 166944 0.82 0.475056
Target:  5'- aGCCAGGGGGAGugcuGCugcAUGAgGAGGGg -3'
miRNA:   3'- aCGGUCCUCCUCu---UGu--UAUUgUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 41032 0.73 0.924728
Target:  5'- aGCCguGGGAGGAGGGCcuagGACAgcuuccgAGGGc -3'
miRNA:   3'- aCGG--UCCUCCUCUUGuua-UUGU-------UCCC- -5'
29044 5' -49.2 NC_006146.1 + 59116 0.8 0.598621
Target:  5'- aUGCCAGGGGaGGGAGCu---AUAGGGGa -3'
miRNA:   3'- -ACGGUCCUC-CUCUUGuuauUGUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 120128 0.73 0.919539
Target:  5'- gUGCCcacaccaccGAGGAGAGCGAgGACGAGGa -3'
miRNA:   3'- -ACGGuc-------CUCCUCUUGUUaUUGUUCCc -5'
29044 5' -49.2 NC_006146.1 + 150229 0.73 0.925292
Target:  5'- aGCCAGGAGGucAGCAGacUGGCcAGGa -3'
miRNA:   3'- aCGGUCCUCCucUUGUU--AUUGuUCCc -5'
29044 5' -49.2 NC_006146.1 + 96453 0.71 0.954381
Target:  5'- gGCCAuGGGGGcaGGGACAuguACAAGGa -3'
miRNA:   3'- aCGGU-CCUCC--UCUUGUuauUGUUCCc -5'
29044 5' -49.2 NC_006146.1 + 166686 0.79 0.651931
Target:  5'- gGCCuggcaGGGGGGAGAcgggGCAAUGGgAGGGGg -3'
miRNA:   3'- aCGG-----UCCUCCUCU----UGUUAUUgUUCCC- -5'
29044 5' -49.2 NC_006146.1 + 116800 0.76 0.804225
Target:  5'- gGCCAcGGGGGGGAGCAGguu--AGGGu -3'
miRNA:   3'- aCGGU-CCUCCUCUUGUUauuguUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.