miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29045 3' -56.8 NC_006146.1 + 103005 0.66 0.901223
Target:  5'- cCCaCGAGGCCCAGUucgUGCUggUCUCGGc- -3'
miRNA:   3'- -GGaGUUCCGGGUCG---ACGG--GGAGUUuc -5'
29045 3' -56.8 NC_006146.1 + 131223 0.66 0.901223
Target:  5'- gCUgcAGGCCCAGgaGCCCgccgcCUCcAAGg -3'
miRNA:   3'- gGAguUCCGGGUCgaCGGG-----GAGuUUC- -5'
29045 3' -56.8 NC_006146.1 + 49247 0.66 0.901223
Target:  5'- aCCUCcGGGUCCAGggccgguaGCCCCcugUAGAGg -3'
miRNA:   3'- -GGAGuUCCGGGUCga------CGGGGa--GUUUC- -5'
29045 3' -56.8 NC_006146.1 + 137596 0.66 0.901223
Target:  5'- gCUCGggccgGGGgCCGGgUGCCCCUgGGu- -3'
miRNA:   3'- gGAGU-----UCCgGGUCgACGGGGAgUUuc -5'
29045 3' -56.8 NC_006146.1 + 152801 0.66 0.901223
Target:  5'- gUUgGAGGCCC-GCUGCUCgUCGcgcGAGu -3'
miRNA:   3'- gGAgUUCCGGGuCGACGGGgAGU---UUC- -5'
29045 3' -56.8 NC_006146.1 + 24884 0.66 0.901223
Target:  5'- gCCagGAGcuGCCCccCUGCCCCUCGGu- -3'
miRNA:   3'- -GGagUUC--CGGGucGACGGGGAGUUuc -5'
29045 3' -56.8 NC_006146.1 + 80666 0.66 0.90059
Target:  5'- aCCUC--GGCCUcucccucGGCUGCCuCCUCc--- -3'
miRNA:   3'- -GGAGuuCCGGG-------UCGACGG-GGAGuuuc -5'
29045 3' -56.8 NC_006146.1 + 160084 0.66 0.899316
Target:  5'- aCCUguGGcccguguagccgguGCCCAGCgugGCgaccuCCCUCAGGGg -3'
miRNA:   3'- -GGAguUC--------------CGGGUCGa--CG-----GGGAGUUUC- -5'
29045 3' -56.8 NC_006146.1 + 44581 0.66 0.894786
Target:  5'- uCCUCcuGGCCCccgggccGCUGCCUUUCc--- -3'
miRNA:   3'- -GGAGuuCCGGGu------CGACGGGGAGuuuc -5'
29045 3' -56.8 NC_006146.1 + 169277 0.66 0.894786
Target:  5'- gCCUggCGGGGgCCAGCgcgggGUCCCggggCGGGGg -3'
miRNA:   3'- -GGA--GUUCCgGGUCGa----CGGGGa---GUUUC- -5'
29045 3' -56.8 NC_006146.1 + 168345 0.66 0.894786
Target:  5'- gCCUggCGGGGgCCAGCgcgggGUCCCggggCGGGGg -3'
miRNA:   3'- -GGA--GUUCCgGGUCGa----CGGGGa---GUUUC- -5'
29045 3' -56.8 NC_006146.1 + 45540 0.66 0.894786
Target:  5'- gCCUCcuuGGGCUUGGCcGCCCUggccuccgCGAGGa -3'
miRNA:   3'- -GGAGu--UCCGGGUCGaCGGGGa-------GUUUC- -5'
29045 3' -56.8 NC_006146.1 + 170208 0.66 0.894786
Target:  5'- gCCUggCGGGGgCCAGCgcgggGUCCCggggCGGGGg -3'
miRNA:   3'- -GGA--GUUCCgGGUCGa----CGGGGa---GUUUC- -5'
29045 3' -56.8 NC_006146.1 + 167413 0.66 0.894786
Target:  5'- gCCUggCGGGGgCCAGCgcgggGUCCCggggCGGGGg -3'
miRNA:   3'- -GGA--GUUCCgGGUCGa----CGGGGa---GUUUC- -5'
29045 3' -56.8 NC_006146.1 + 35570 0.66 0.894786
Target:  5'- -aUUAGGcGCCCGuGCcuCCCCUCAGAGc -3'
miRNA:   3'- ggAGUUC-CGGGU-CGacGGGGAGUUUC- -5'
29045 3' -56.8 NC_006146.1 + 167638 0.66 0.894786
Target:  5'- cCCgCGGGGCCCGGCgcgUGCCgggggCC-CGGGGg -3'
miRNA:   3'- -GGaGUUCCGGGUCG---ACGG-----GGaGUUUC- -5'
29045 3' -56.8 NC_006146.1 + 125988 0.66 0.894786
Target:  5'- gUUCAAGagauuguCCCAGCgccgGCCgCUCAAGGu -3'
miRNA:   3'- gGAGUUCc------GGGUCGa---CGGgGAGUUUC- -5'
29045 3' -56.8 NC_006146.1 + 23437 0.66 0.894786
Target:  5'- aCCaCAAGcUCCGGCUGCCCgUCucGGc -3'
miRNA:   3'- -GGaGUUCcGGGUCGACGGGgAGuuUC- -5'
29045 3' -56.8 NC_006146.1 + 41861 0.66 0.89413
Target:  5'- gCgUCuGGGCCCAGCUcgggcugcgccguGCCCCg----- -3'
miRNA:   3'- -GgAGuUCCGGGUCGA-------------CGGGGaguuuc -5'
29045 3' -56.8 NC_006146.1 + 168348 0.66 0.89413
Target:  5'- gCCUCAguGGGCugaagaaCCAGgUGCCCCgaguAGg -3'
miRNA:   3'- -GGAGU--UCCG-------GGUCgACGGGGaguuUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.