miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29045 3' -56.8 NC_006146.1 + 103005 0.66 0.901223
Target:  5'- cCCaCGAGGCCCAGUucgUGCUggUCUCGGc- -3'
miRNA:   3'- -GGaGUUCCGGGUCG---ACGG--GGAGUUuc -5'
29045 3' -56.8 NC_006146.1 + 2272 0.66 0.884016
Target:  5'- gCUC-GGGCCCcggggaagccccccGCUcGCCCCUCGGGu -3'
miRNA:   3'- gGAGuUCCGGGu-------------CGA-CGGGGAGUUUc -5'
29045 3' -56.8 NC_006146.1 + 1340 0.66 0.884016
Target:  5'- gCUC-GGGCCCcggggaagccccccGCUcGCCCCUCGGGu -3'
miRNA:   3'- gGAGuUCCGGGu-------------CGA-CGGGGAGUUUc -5'
29045 3' -56.8 NC_006146.1 + 80592 0.66 0.874129
Target:  5'- cCCUUAcuAGGCCCcuccccuCUGCCCCUUc--- -3'
miRNA:   3'- -GGAGU--UCCGGGuc-----GACGGGGAGuuuc -5'
29045 3' -56.8 NC_006146.1 + 113559 0.66 0.866809
Target:  5'- cCCUCAccgacacccgGGGCCCc---GCCCC-CAGAGa -3'
miRNA:   3'- -GGAGU----------UCCGGGucgaCGGGGaGUUUC- -5'
29045 3' -56.8 NC_006146.1 + 12464 0.66 0.866809
Target:  5'- gCCUUucAGGCCCucggGCCCCUCu-GGa -3'
miRNA:   3'- -GGAGu-UCCGGGucgaCGGGGAGuuUC- -5'
29045 3' -56.8 NC_006146.1 + 15543 0.66 0.866809
Target:  5'- gCCUUucAGGCCCucggGCCCCUCu-GGa -3'
miRNA:   3'- -GGAGu-UCCGGGucgaCGGGGAGuuUC- -5'
29045 3' -56.8 NC_006146.1 + 18621 0.66 0.866809
Target:  5'- gCCUUucAGGCCCucggGCCCCUCu-GGa -3'
miRNA:   3'- -GGAGu-UCCGGGucgaCGGGGAGuuUC- -5'
29045 3' -56.8 NC_006146.1 + 21699 0.66 0.866809
Target:  5'- gCCUUucAGGCCCucggGCCCCUCu-GGa -3'
miRNA:   3'- -GGAGu-UCCGGGucgaCGGGGAGuuUC- -5'
29045 3' -56.8 NC_006146.1 + 3204 0.66 0.884016
Target:  5'- gCUC-GGGCCCcggggaagccccccGCUcGCCCCUCGGGu -3'
miRNA:   3'- gGAGuUCCGGGu-------------CGA-CGGGGAGUUUc -5'
29045 3' -56.8 NC_006146.1 + 84815 0.66 0.887443
Target:  5'- gCUCGAGaGCCCcccuGCcuagacaUGCCCCUUGAu- -3'
miRNA:   3'- gGAGUUC-CGGGu---CG-------ACGGGGAGUUuc -5'
29045 3' -56.8 NC_006146.1 + 32980 0.66 0.888122
Target:  5'- gCU--GGGUCgCGGCUGCCCC-CGGAa -3'
miRNA:   3'- gGAguUCCGG-GUCGACGGGGaGUUUc -5'
29045 3' -56.8 NC_006146.1 + 24884 0.66 0.901223
Target:  5'- gCCagGAGcuGCCCccCUGCCCCUCGGu- -3'
miRNA:   3'- -GGagUUC--CGGGucGACGGGGAGUUuc -5'
29045 3' -56.8 NC_006146.1 + 80666 0.66 0.90059
Target:  5'- aCCUC--GGCCUcucccucGGCUGCCuCCUCc--- -3'
miRNA:   3'- -GGAGuuCCGGG-------UCGACGG-GGAGuuuc -5'
29045 3' -56.8 NC_006146.1 + 125988 0.66 0.894786
Target:  5'- gUUCAAGagauuguCCCAGCgccgGCCgCUCAAGGu -3'
miRNA:   3'- gGAGUUCc------GGGUCGa---CGGgGAGUUUC- -5'
29045 3' -56.8 NC_006146.1 + 23437 0.66 0.894786
Target:  5'- aCCaCAAGcUCCGGCUGCCCgUCucGGc -3'
miRNA:   3'- -GGaGUUCcGGGUCGACGGGgAGuuUC- -5'
29045 3' -56.8 NC_006146.1 + 168348 0.66 0.89413
Target:  5'- gCCUCAguGGGCugaagaaCCAGgUGCCCCgaguAGg -3'
miRNA:   3'- -GGAGU--UCCG-------GGUCgACGGGGaguuUC- -5'
29045 3' -56.8 NC_006146.1 + 41861 0.66 0.89413
Target:  5'- gCgUCuGGGCCCAGCUcgggcugcgccguGCCCCg----- -3'
miRNA:   3'- -GgAGuUCCGGGUCGA-------------CGGGGaguuuc -5'
29045 3' -56.8 NC_006146.1 + 100061 0.66 0.888122
Target:  5'- cCCUCAcucGGGCCCgcuuGGCccuugGCCCCagacaUAGAGa -3'
miRNA:   3'- -GGAGU---UCCGGG----UCGa----CGGGGa----GUUUC- -5'
29045 3' -56.8 NC_006146.1 + 68934 0.66 0.888122
Target:  5'- gCCUCuagccAGaGCCCGGa-GCCCCUagcCAGGGg -3'
miRNA:   3'- -GGAGu----UC-CGGGUCgaCGGGGA---GUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.