Results 21 - 40 of 172 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29045 | 3' | -56.8 | NC_006146.1 | + | 159062 | 0.66 | 0.888122 |
Target: 5'- cCCgagaagCAGGGCCCGGCgcaagggGUCCCa----- -3' miRNA: 3'- -GGa-----GUUCCGGGUCGa------CGGGGaguuuc -5' |
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29045 | 3' | -56.8 | NC_006146.1 | + | 100061 | 0.66 | 0.888122 |
Target: 5'- cCCUCAcucGGGCCCgcuuGGCccuugGCCCCagacaUAGAGa -3' miRNA: 3'- -GGAGU---UCCGGG----UCGa----CGGGGa----GUUUC- -5' |
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29045 | 3' | -56.8 | NC_006146.1 | + | 68934 | 0.66 | 0.888122 |
Target: 5'- gCCUCuagccAGaGCCCGGa-GCCCCUagcCAGGGg -3' miRNA: 3'- -GGAGu----UC-CGGGUCgaCGGGGA---GUUUC- -5' |
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29045 | 3' | -56.8 | NC_006146.1 | + | 32980 | 0.66 | 0.888122 |
Target: 5'- gCU--GGGUCgCGGCUGCCCC-CGGAa -3' miRNA: 3'- gGAguUCCGG-GUCGACGGGGaGUUUc -5' |
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29045 | 3' | -56.8 | NC_006146.1 | + | 84815 | 0.66 | 0.887443 |
Target: 5'- gCUCGAGaGCCCcccuGCcuagacaUGCCCCUUGAu- -3' miRNA: 3'- gGAGUUC-CGGGu---CG-------ACGGGGAGUUuc -5' |
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29045 | 3' | -56.8 | NC_006146.1 | + | 1340 | 0.66 | 0.884016 |
Target: 5'- gCUC-GGGCCCcggggaagccccccGCUcGCCCCUCGGGu -3' miRNA: 3'- gGAGuUCCGGGu-------------CGA-CGGGGAGUUUc -5' |
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29045 | 3' | -56.8 | NC_006146.1 | + | 3204 | 0.66 | 0.884016 |
Target: 5'- gCUC-GGGCCCcggggaagccccccGCUcGCCCCUCGGGu -3' miRNA: 3'- gGAGuUCCGGGu-------------CGA-CGGGGAGUUUc -5' |
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29045 | 3' | -56.8 | NC_006146.1 | + | 2272 | 0.66 | 0.884016 |
Target: 5'- gCUC-GGGCCCcggggaagccccccGCUcGCCCCUCGGGu -3' miRNA: 3'- gGAGuUCCGGGu-------------CGA-CGGGGAGUUUc -5' |
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29045 | 3' | -56.8 | NC_006146.1 | + | 55492 | 0.66 | 0.880534 |
Target: 5'- --aCGAGGCCCggccgccAGCUGCCuCCUgCAc-- -3' miRNA: 3'- ggaGUUCCGGG-------UCGACGG-GGA-GUuuc -5' |
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29045 | 3' | -56.8 | NC_006146.1 | + | 48876 | 0.66 | 0.874129 |
Target: 5'- gCCUCcAGGCgCCAGgcCUGCgCCUCu--- -3' miRNA: 3'- -GGAGuUCCG-GGUC--GACGgGGAGuuuc -5' |
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29045 | 3' | -56.8 | NC_006146.1 | + | 80592 | 0.66 | 0.874129 |
Target: 5'- cCCUUAcuAGGCCCcuccccuCUGCCCCUUc--- -3' miRNA: 3'- -GGAGU--UCCGGGuc-----GACGGGGAGuuuc -5' |
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29045 | 3' | -56.8 | NC_006146.1 | + | 18621 | 0.66 | 0.866809 |
Target: 5'- gCCUUucAGGCCCucggGCCCCUCu-GGa -3' miRNA: 3'- -GGAGu-UCCGGGucgaCGGGGAGuuUC- -5' |
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29045 | 3' | -56.8 | NC_006146.1 | + | 21699 | 0.66 | 0.866809 |
Target: 5'- gCCUUucAGGCCCucggGCCCCUCu-GGa -3' miRNA: 3'- -GGAGu-UCCGGGucgaCGGGGAGuuUC- -5' |
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29045 | 3' | -56.8 | NC_006146.1 | + | 27855 | 0.66 | 0.866809 |
Target: 5'- gCCUUucAGGCCCucggGCCCCUCu-GGa -3' miRNA: 3'- -GGAGu-UCCGGGucgaCGGGGAGuuUC- -5' |
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29045 | 3' | -56.8 | NC_006146.1 | + | 15543 | 0.66 | 0.866809 |
Target: 5'- gCCUUucAGGCCCucggGCCCCUCu-GGa -3' miRNA: 3'- -GGAGu-UCCGGGucgaCGGGGAGuuUC- -5' |
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29045 | 3' | -56.8 | NC_006146.1 | + | 113559 | 0.66 | 0.866809 |
Target: 5'- cCCUCAccgacacccgGGGCCCc---GCCCC-CAGAGa -3' miRNA: 3'- -GGAGU----------UCCGGGucgaCGGGGaGUUUC- -5' |
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29045 | 3' | -56.8 | NC_006146.1 | + | 24777 | 0.66 | 0.866809 |
Target: 5'- gCCUUucAGGCCCucggGCCCCUCu-GGa -3' miRNA: 3'- -GGAGu-UCCGGGucgaCGGGGAGuuUC- -5' |
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29045 | 3' | -56.8 | NC_006146.1 | + | 12464 | 0.66 | 0.866809 |
Target: 5'- gCCUUucAGGCCCucggGCCCCUCu-GGa -3' miRNA: 3'- -GGAGu-UCCGGGucgaCGGGGAGuuUC- -5' |
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29045 | 3' | -56.8 | NC_006146.1 | + | 68846 | 0.66 | 0.866809 |
Target: 5'- gCUCAAGGCCCuGCUGgCaagCAGGc -3' miRNA: 3'- gGAGUUCCGGGuCGACgGggaGUUUc -5' |
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29045 | 3' | -56.8 | NC_006146.1 | + | 160090 | 0.67 | 0.859281 |
Target: 5'- aUCUCAuGGCCCaugGGCgGCCUCUaguGGAGg -3' miRNA: 3'- -GGAGUuCCGGG---UCGaCGGGGAg--UUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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